Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01615 ATGGGTCTGTTAAGAGCTGCAATTGGAGATGCAATTCTGACATCAATGTGGGTTTTCATCATCTCAACTTTGAGAATAGCTTCAACCTTCAACCCTTCAACCACAGTTTCATTCTACACTGCAGGTCTCAGACCTGACTCATCTCTTGCATCAATGGCTGTTAGGTTCCCTGCTCAGGCATTTGGTGGGGCTGTTGGAGCCAAGGCTCTTCTTCTTGTTATGCCATCACAGTACAAGCAGATGGTGAAAGGTCCTTTTTTGAAGGTGGACTTGCACACTGGTGCCATTGCTGAGGGGTTCTTGACCTTTACTCATAACATGGCTATTCTCTTTGTGATGCTGAGGGGTCCCAAGAACCCTTTTTTGAAGGTGTATTTGCTTTCTGTTGCTACTGTTGCTTTGGTTATCCCTGGTGCTGGGTTCACTGGCCCTTCCATGAACCCTGCCAATGCCTTTGGATGGGCCTTTGTCAACAACAAGCACAACACTTGGGAGCAGTTTTATGTCTATTGGGTATGCCCTTTCATAGGAGCATCCTCTGCTGCTTTCATCTTCAGGTCTATATTTCTGGCACCAATCAAGCACAAGAAGGCTTGA 597 0.4623 MGLLRAAIGDAILTSMWVFIISTLRIASTFNPSTTVSFYTAGLRPDSSLASMAVRFPAQAFGGAVGAKALLLVMPSQYKQMVKGPFLKVDLHTGAIAEGFLTFTHNMAILFVMLRGPKNPFLKVYLLSVATVALVIPGAGFTGPSMNPANAFGWAFVNNKHNTWEQFYVYWVCPFIGASSAAFIFRSIFLAPIKHKKA 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01615 198 SUPERFAMILY Aquaporin-like 3 192 IPR023271 -
Vimu5g01615 198 PRINTS Major intrinsic protein family signature 128 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01615 198 PRINTS Major intrinsic protein family signature 168 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01615 198 PRINTS Major intrinsic protein family signature 5 24 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01615 198 Gene3D Glycerol uptake facilitator protein. 2 196 IPR023271 -
Vimu5g01615 198 Pfam Major intrinsic protein 15 185 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01615 198 PANTHER AQUAPORIN SIP1-1 29 197 IPR044222 GO:0015250
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01615 Vimu-Chr5 27700342 27701061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01615 1 189 Major Intrinsic Protein MIP AT3G04090 41.850 7.28e-54 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01615 K09875 - gmx:100797126 323.168