Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01593 ATGGCTATGGGGAGAACACTGTTCCTCTTTGTTTTGTGCTTGTGGATTCCCCTGGAAGTGGTGGGGAGGAAAGAGCCCTCTTCACCTACAAGTGTGGATTCCTCTGTTTCTTCGAGACCGAAGGTTGTGAAATTTGGAGCCCTCTTTCCTATGGATTCTGTCATTGGAAGATCTGCTTTACCTGCAATTTTGGCTGCTGTTAAAGATGTTAATTCTAGCACGAGCATTCTCCCTGGCATTGACTTGCAAGTCATTTTGCACAGCACAAATTGCAGTGCGTTTCTTGCAACAATGGAAGCTCTGCAACTGATGGAGAATGATGTGGTTGCTGTTGTTGGTCCACTGTCATCTGGAACAGCTCATATAATCTCTCATGTTGTTAATGAGCTCCATGTACCTCTTCTGTCGTTTGGGGCTACTGACCCCACTCTTTCTTCTCTACAGTACCCATATTTTATCCGCACTACTCAGAACGACTATTTTCAGATGTATGCAGTTTCAGCCTTTATTAATTATCACAGATGGAGGGAGGTAATTGCCATCTATGTAGATGATGACAATGGCAGGAATGGAATTTCTGTATTGGGTGATGCACTGTCGAAGAAACGTTCCAAGATCTCTTACAAGGCTGCTTTTTCTCCTGGGGCCTCAGAAAGTGATATCAGTGACTTGTTGAATGAAGTGAACTTGATGGAATCGCGGGTCTATGTTCTGCATGTGAATCCTGATACTGGTTTAGCAATTTTCTCTATTGCCAAGAAGCTCGGAATGATGGGCAGTGGCTATGTTTGGATTGCAACAGATTGGCTTCCTTCAGTGCTGGATTCCTCAGAGTCACCTGACCCTGACACAATGAATCTCTTACAAGGGATTGTGGCTTTTCGTCATCACATTCCTGACACTGATCTCAAGGAGAATCTTCTCTCCAGCTTGAAAAGCCAAAGGGTCAAAGAGACTGTAAGCTTCAATTCTTATGCATTTTATGCTTATGATTCTGTCTGGTTAGCAGCTCGTGCTCTTGATGCTTATCTCAATGAAGGGGGAAACATTTCTTTCTCTAGTGACCCTAAGTTGCAAGACACAAATGGAAGCATGTTGCATTTAGCTTCACTTCGTACATTTGATGGTGGTCCACAGTTTCTCCAGACAATTTTGGGAATGAGCTTCACTGGTGTGAGTGGTCAAATTGAGTTTGACATGGACAAGAATCTAGTTCATCCAGCATATGAAATTCTCAATATTGGTGGTAGTGGATCCCGTAGAATTGGTTACTGGTCTAATCATTCTGGTCTGACAGTTGTAGCTCCTGAAACTTTATATCTGAAAAAATCATCGAACACATCTTTGATGAGAAATCAACAACTTTACAGTGTGATATGGCCTGGAGAGATTACAACTACACCAAGAGGGTGGGTGTTTCCCAACAATGGACAACCACTTAGGATAGCAGTTCCTAACAGAGTGAGCTACAAGGACTTTGTTTCTAAGGACAACAACCCGCCAGGGGTACAAGGCTATTGCATTGACGTTTTTGAAGCAGCCTTGAAATTGTTGCCTTACCCTGTCCCACGAAAATACATGTTATTTGGAAATGGTAACTTTGATGCAGCTGTTGGAGATGTTACAATTGTCACAAATAGGACAAGGATAGTGGATTTTACTCAACCTTTCATGCCATCAGGGCTTGTTGTTGTTGTTCCTTTTAAAGAGCAGAAGTCAAGTCCTTGGTCTTTCCTTCAGCCATTCACTACTGAAATGTGGTGTGTCACTGGTGCTTTCTTTCTTTTTGTTGGAAGTGTTGTATGGATTCTTGAGCACAGGCTCAATCCTGAGTTCCGGGGCTCACCGAGGAAACAACTTATAACAGTGTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGGGAGAACACTGTGAGTGGACTTGGACGATTGGTGCTAATCATATGGCTCTTTGTGGTGTTGATCATAAATTCAAGCTACACAGCTAGCTTGACCTCTATCCTCACTGTGCGGCAACTGTCATCTCAAATTGAAGGAATCGATAGCTTGATCTCAAGTACACTACCGATTGGAATTCAAGATGGTTCATTTGCACGCAAGTATCTTGTAGATGACCTCAATATAGCTGAATCTAGAATAGTTACGCTGAAAAACATGGAGGATTATATTGATGCCCTTCAGCGAGGACCTCAAGCTGGAGGAGTTGTGGCAGTTGTTGACGAGCTTCCTTACATTGAGCTCTTGATGTCCAGCAGTCAGTGTAAGTTCAGAACTGTTGGCCAGGAGTTCACTAAAAGTGGCTGGGGATTTGTGAGTATCTCTTCTTGCATGTCTAAGGCATTCCAGAGGGACTCTCCCCTTGCAGTTGACTTGTCAACCGCCATTCTTCAACTCTCTGAGAGTGGTGACCTGCAAAGGATTCATGACAAATGGCTTAACAGAAAGGAGTGTACAACCGTAGATGTTGATTCAAACAAACTAGCTCTGACAAGCTTCTGGGGCCTCTTTCTTATATGTGGCATTGCATGTTTCATTACCCTCATAATTTTCTTTGCCAGAATCTTCTGTCAATATAACAAATTCATCCCAGAATCTGAGAAAACTGATGAGGAACTCCAACCAGTGAGGAGGTCTAGACGTCCAAGCAGAACTCCTAGCCTCAAGAAGTTGATGGTATTTGTAGATAAAAGGGAAGCAGAAGTCAAAGAGATACTTAGGGAAAACAAGAAAAGGAGACACAGCCAAAGCTTGGATGATCCTTCTGTTTCATCAGCCATCTAG 2787 0.4288 MAMGRTLFLFVLCLWIPLEVVGRKEPSSPTSVDSSVSSRPKVVKFGALFPMDSVIGRSALPAILAAVKDVNSSTSILPGIDLQVILHSTNCSAFLATMEALQLMENDVVAVVGPLSSGTAHIISHVVNELHVPLLSFGATDPTLSSLQYPYFIRTTQNDYFQMYAVSAFINYHRWREVIAIYVDDDNGRNGISVLGDALSKKRSKISYKAAFSPGASESDISDLLNEVNLMESRVYVLHVNPDTGLAIFSIAKKLGMMGSGYVWIATDWLPSVLDSSESPDPDTMNLLQGIVAFRHHIPDTDLKENLLSSLKSQRVKETVSFNSYAFYAYDSVWLAARALDAYLNEGGNISFSSDPKLQDTNGSMLHLASLRTFDGGPQFLQTILGMSFTGVSGQIEFDMDKNLVHPAYEILNIGGSGSRRIGYWSNHSGLTVVAPETLYLKKSSNTSLMRNQQLYSVIWPGEITTTPRGWVFPNNGQPLRIAVPNRVSYKDFVSKDNNPPGVQGYCIDVFEAALKLLPYPVPRKYMLFGNGNFDAAVGDVTIVTNRTRIVDFTQPFMPSGLVVVVPFKEQKSSPWSFLQPFTTEMWCVTGAFFLFVGSVVWILEHRLNPEFRGSPRKQLITVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVRQLSSQIEGIDSLISSTLPIGIQDGSFARKYLVDDLNIAESRIVTLKNMEDYIDALQRGPQAGGVVAVVDELPYIELLMSSSQCKFRTVGQEFTKSGWGFVSISSCMSKAFQRDSPLAVDLSTAILQLSESGDLQRIHDKWLNRKECTTVDVDSNKLALTSFWGLFLICGIACFITLIIFFARIFCQYNKFIPESEKTDEELQPVRRSRRPSRTPSLKKLMVFVDKREAEVKEILRENKKRRHSQSLDDPSVSSAI 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01593 928 SUPERFAMILY Periplasmic binding protein-like I 38 472 IPR028082 -
Vimu5g01593 928 PIRSF IGluLR_plant 1 927 IPR017103 -
Vimu5g01593 928 FunFam Glutamate receptor 158 325 - -
Vimu5g01593 928 Gene3D - 62 406 - -
Vimu5g01593 928 CDD GluR_Plant 478 814 - -
Vimu5g01593 928 SMART GluR_14 481 816 IPR001320 GO:0015276|GO:0016020
Vimu5g01593 928 Gene3D - 574 697 - -
Vimu5g01593 928 Gene3D - 158 431 - -
Vimu5g01593 928 CDD PBP1_GABAb_receptor_plant 44 435 IPR044440 -
Vimu5g01593 928 Pfam Ligand-gated ion channel 816 845 IPR001320 GO:0015276|GO:0016020
Vimu5g01593 928 Gene3D - 476 573 - -
Vimu5g01593 928 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 880 IPR015683 -
Vimu5g01593 928 Pfam Receptor family ligand binding region 60 415 IPR001828 -
Vimu5g01593 928 FunFam Glutamate receptor 701 818 - -
Vimu5g01593 928 Gene3D - 698 818 - -
Vimu5g01593 928 FunFam Glutamate receptor 475 575 - -
Vimu5g01593 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 329 341 - -
Vimu5g01593 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 56 72 - -
Vimu5g01593 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 116 144 - -
Vimu5g01593 928 FunFam Glutamate receptor 575 705 - -
Vimu5g01593 928 SUPERFAMILY Periplasmic binding protein-like II 455 816 - -
Vimu5g01593 928 MobiDBLite consensus disorder prediction 907 928 - -
Vimu5g01593 928 Pfam Bacterial extracellular solute-binding proteins, family 3 528 815 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01593 Vimu-Chr5 27426415 27432202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01593 39 773 Ion Channels AT1G05200 67.643 0.0 1071
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01593 K05387 - gmx:100802782 1575.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01593 5 27426415 27432202 Vimu5g01593 5 27426415 27432202 ECH
Vimu4g00897 4 7379218 7384598 Vimu5g01593 5 27426415 27432202 PCT
Vimu5g01593 5 27426415 27432202 Vimu4g00896 4 7366096 7371256 PCT