Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01589 ATGTTCCAGCCGAACCTGATGGAAGCTTTGGAGATGGGTCAGAACACTTCGGAGAGTGAGGTCCCTCGAATCCGTGAAGATGAGTTCGACAGTGCCACCAAGTCTGGTAGTGAAAACCATGAAGGTGCCTCTGGCGAAGACCAAGACCCTCGTCCCAACAAGAAGAAGCGTTACCACCGCCACACCCAACACCAGATCCAGGAAATGGAAGCATTCTTCAAGGAGTGTCCACACCCAGATGACAAACAAAGGAAAGAACTGAGCAGGGAATTAGGGTTAGAACCATTGCAGGTTAAGTTTTGGTTTCAGAACAAACGTACCCAGATGAAGACACAGCATGAGCGGCATGAGAATACACAACTTAGAACCGAGAACGAGAAGCTTCGAGCTGATAACATGAGGTATAGGGAAGCTCTTAGCAATGCTTCGTGTCCTAATTGTGGTGGACCAACCGCAATAGGAGAAATGTCATTTGATGAACATCACTTGAGGCTTGAGAATGCAAGGCTTAGAGAAGAGATTGACAGGATTTCAGCAATTGCTGCTAAGTATGTAGGTAAGCCTGTGGTGAATTATTCAAATATTTCTCCTTCCCTCCCTCCTCGTCCTCTAGAACTTGGGGTTGGTGCTGGTTTTGGAGGCCAGCCAGCTATTGGTGTGGACATGTATGGAGCTGGAGATCTTCTGAGATCAATTAGTGGACCCACTGAAGCTGATAAACCCATCATAATAGAGCTAGCTGTTGCAGCTATGGAGGAGCTCATTGGAATGGCACAAATGGGTGATCCCCTTTGGTTAACTACTCTTGATGCCACATCTACTATCCTCAATGAGGACGAATACATCAGATCTTTCCCTCGAGGAATTGGCCCAAAACCTACTGGTTTCAAATGTGAAGCTTCTCGAGAAACTGCTGTTGTTATCATGAACCATGTCAGCCTCGTTGAGATTCTCATGGATGTTAATCAATGGTCTACAGTGTTCTCTGGTATAGTCTCAAGAGCCATGACTCTGGAAGTGCTATCTACAGGAGTGGCTGGGAACTACAATGGTGCTTTACAAGTGATGACAGCAGAATTGCAACTACCTACCCCTCTTGTGCCAACTCGTGAGAGTTATTTTGTAAGGTATTGTAAGCAACATTCGGATGGAACTTGGGCAGTGGTGGATGTGTCTCTGGATAATTTGCGTCCTAGTCCTTCAGCCAGATGTAGGAGAAGACCTTCTGGTTGCTTAATTCAGGAAATGCCAAATGGCTATTCAAAGGTCACGTGGGTCGAACATGTTGAAGTGGATGACAGAGGTGTTCATAATCTTTACAAACAGCTTGTTAGCTCTGGACATGCATTTGGTGCCAAACGTTGGGTTGCAACCTTGGATAGACAGTGTGAAAGACTTGCCAGTGCTATGGCAACAAATATTCCCACAGTTGATGTTGGTGTGATAACAAACCAAGAGGGTAGAAAGAGTATGATGAAACTGGCTGAAAGAATGGTGATAAGCTTTTGTGCTGGTGTGAGTGCTTCCACTGCTCACACATGGACAACACTGTCTGGAACAGGTGCCGATGATGTAAGGGTGATGACCCGAAAGAGTGTGGATGATCCTGGAAGACCTCCTGGCATTGTTCTCAGTGCAGCCACTTCTTTTTGGCTTCCAGTTCCACCTAAACGAGTTTTTGACTTTCTCCGTGATGAGAACTCTAGGAATGAGTGGGACATTCTTTCCAATGGTGGAGTTGTGCAAGAAATGGCACACATTGCAAATGGACGAGATACTGGAAACTGCGTGTCTCTACTTCGAGTAAATAGTGCAAATTCAAGTCAGAGTAACATGTTGATACTGCAAGAGAGTTGCACCGATTCAACAGGGTCTTTTGTGATTTATGCTCCAGTAGATATTGTTGCAATGAATGTAGTTCTAAATGGAGGAGACCCAGATTATGTGGCACTTCTTCCGTCAGGGTTTGCAATTCTCCCAGATGGAACTATATCTCACGAAACTGGAGCTGGTGGATCTCTTTTAACTGTTGCGTTTCAAATACTGGTTGATTCGGTTCCAACTGCTAAGCTTTCACTAGGATCTGTTGCCACTGTCAACAATCTCATTGCATGCACTGTTGAGAGAATCAAAGCATCTTTGTCTGGTGAATCTGCTTGA 2160 0.4523 MFQPNLMEALEMGQNTSESEVPRIREDEFDSATKSGSENHEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYSNISPSLPPRPLELGVGAGFGGQPAIGVDMYGAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGDPLWLTTLDATSTILNEDEYIRSFPRGIGPKPTGFKCEASRETAVVIMNHVSLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQLPTPLVPTRESYFVRYCKQHSDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWVATLDRQCERLASAMATNIPTVDVGVITNQEGRKSMMKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTISHETGAGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGESA 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01589 719 SMART HOX_1 53 116 IPR001356 GO:0003677
Vimu5g01589 719 MobiDBLite consensus disorder prediction 20 53 - -
Vimu5g01589 719 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Vimu5g01589 719 SUPERFAMILY Homeodomain-like 44 112 IPR009057 -
Vimu5g01589 719 CDD START_ArGLABRA2_like 240 464 - -
Vimu5g01589 719 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Vimu5g01589 719 SMART START_1 245 465 IPR002913 GO:0008289
Vimu5g01589 719 Pfam Homeodomain 55 110 IPR001356 GO:0003677
Vimu5g01589 719 Pfam START domain 246 465 IPR002913 GO:0008289
Vimu5g01589 719 SUPERFAMILY Bet v1-like 236 467 - -
Vimu5g01589 719 Gene3D - 293 462 IPR023393 -
Vimu5g01589 719 SUPERFAMILY Bet v1-like 484 711 - -
Vimu5g01589 719 FunFam Homeobox-leucine zipper protein GLABRA 2 245 464 - -
Vimu5g01589 719 CDD homeodomain 55 113 IPR001356 GO:0003677
Vimu5g01589 719 MobiDBLite consensus disorder prediction 1 63 - -
Vimu5g01589 719 ProSiteProfiles START domain profile. 236 468 IPR002913 GO:0008289
Vimu5g01589 719 Coils Coil 118 138 - -
Vimu5g01589 719 FunFam Homeobox-leucine zipper protein HDG1 42 128 - -
Vimu5g01589 719 Gene3D - 41 129 - -
Vimu5g01589 719 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 53 714 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01589 Vimu-Chr5 27392971 27397106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01589 1 719 Homeobox Transcription Factor Family AT1G05230 78.308 0.0 1173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu5g01589 START 3.5e-59 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01589 K09338 - gmx:100782260 1391.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01589 5 27392971 27397106 Vimu5g01589 5 27392971 27397106 ECH
Vimu4g00900 4 7409969 7415441 Vimu5g01589 5 27392971 27397106 PCT