Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01588 ATGAAGAGAAAGAAGGAGGAAGAAGAAGAAGATGAAGAGATAGGGACAAGGGCATTGAAGGAAGGAGGGAGAGAGAGAGGGAAGTGGGGAACAGATGGAGGAAAATGTGGCAGCGAAGATCTTCTCGGTGAAGGGGGATTTGGATACGTCTACAAAGGACGGATTGACGAACACACGTTTACAGCTTCAAAGCCTGGATCAGGAATGGTCGTTGCTGTTTTCAAGGTCATAAAAGTGGCTATTGGTGCTGCTAAAGGACTCTGTTTTCTTCATAACGCCAAATCACAAGTCATATACCGTGATTTTAAAGCCTCTAACATCCTACTTGATGCGCTAAGATCAACTGAGTTCAATGCTAAACTCTCTGACTTTGGTTTAGCCAAGGCGGGTCCTACTCGTGATAGAACTCACGTCTCTACTCAAGTCATGGGCACTCAAGGATATGCAACACCTGAATATGTTGCAATTGGTAGGTTGACGGCGAAAAGCGATGTGTACAGCTTTGGAGTTGTGTTGCTTGAACTTCTATCTGGAAGAAGAGTTGTTGATAAAACAATAGCTGGTATGGAGTAA 573 0.4415 MKRKKEEEEEDEEIGTRALKEGGRERGKWGTDGGKCGSEDLLGEGGFGYVYKGRIDEHTFTASKPGSGMVVAVFKVIKVAIGAAKGLCFLHNAKSQVIYRDFKASNILLDALRSTEFNAKLSDFGLAKAGPTRDRTHVSTQVMGTQGYATPEYVAIGRLTAKSDVYSFGVVLLELLSGRRVVDKTIAGME 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01588 190 PANTHER OS01G0588500 PROTEIN-RELATED 77 185 - -
Vimu5g01588 190 Gene3D Transferase(Phosphotransferase) domain 1 68 189 - -
Vimu5g01588 190 ProSitePatterns Protein kinases ATP-binding region signature. 42 75 IPR017441 GO:0005524
Vimu5g01588 190 ProSitePatterns Serine/Threonine protein kinases active-site signature. 97 109 IPR008271 GO:0004672|GO:0006468
Vimu5g01588 190 SUPERFAMILY Protein kinase-like (PK-like) 39 183 IPR011009 -
Vimu5g01588 190 ProSiteProfiles Protein kinase domain profile. 1 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01588 190 MobiDBLite consensus disorder prediction 1 32 - -
Vimu5g01588 190 SMART serkin_6 39 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01588 190 Pfam Protein kinase domain 76 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01588 Vimu-Chr5 27385506 27391699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01588 47 185 Glycoside Hydrolase AT3G07070 54.286 8.26e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu5g01588 Pkinase 1.5e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01588 - - gmx:100809778 194.897