Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01581 ATGGCTGACATAGATCGCTCCCCTGATAATGTTTCTGCTGATTCTAAAGAGAAATCCCTACAAACTTCGACTGTGGAATTTTCTGAGGCTGAGGAAATCCTTATTGCCATGGTGTATAATCTGGTTGGGGAGAGGTGGTCTTTGATTGCTGGAAGAATTCCTGGAAGAACTGCAGAAGAGATAGAGAAGGTTTTGAGAATTACATTACAAAAAGAATTGACGATTGCTGCGGTGCATTGGCGAGACGATTTGCGAGGAGGCGAGAAAGGTGAAGGAAATTTGAAGGTCCCAGTTAACCAGTTAACTGCACTTAGAGGGCCTAAAGAAAAAGTTTATGGTGCCTCTACCACTACATTTGCCGACGGTGGCACCATCTATCGCTACCACTATCAGAGATTAAGTGACTACCATGCCATTAACGACACCTTCATCGGAGTTCCTTTTAAAGTTATGAATTTGCTCCCTTTCTCGTCGTGCATTGTGGCATGTTTGGTAGCTATTCAGTCGAGTTTATTATTTATAGCCGTGGTGGCTCTCCAACAATCACCTCTTTATCAACAAATCTGGGAGTTTACTCCATATAAATCTCTTCTTGCAAATCGTCCTTGA 609 0.4269 MADIDRSPDNVSADSKEKSLQTSTVEFSEAEEILIAMVYNLVGERWSLIAGRIPGRTAEEIEKVLRITLQKELTIAAVHWRDDLRGGEKGEGNLKVPVNQLTALRGPKEKVYGASTTTFADGGTIYRYHYQRLSDYHAINDTFIGVPFKVMNLLPFSSCIVACLVAIQSSLLFIAVVALQQSPLYQQIWEFTPYKSLLANRP 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01581 202 CDD SANT 26 61 IPR001005 -
Vimu5g01581 202 Gene3D - 26 88 - -
Vimu5g01581 202 Pfam Myb-like DNA-binding domain 25 61 IPR001005 -
Vimu5g01581 202 SUPERFAMILY Homeodomain-like 24 75 IPR009057 -
Vimu5g01581 202 MobiDBLite consensus disorder prediction 1 22 - -
Vimu5g01581 202 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 26 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01581 Vimu-Chr5 27269117 27274194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01581 27 76 MYB Transcription Factor Family AT5G14750 46.000 4.71e-09 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu5g01581 Myb_DNA-binding 3.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01581 - - var:108340066 118.242