Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01580 ATGTCTGAATTCGAAACAAACATCCCAAGTGCTTTTGATCCCTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGACGAAAGAGTATGTTCATGTTCGAGTACAACAACGTAACGGAAGGAAAAGCCTAACAACTGTTCAAGGATTAAAGAAAGAGTATAGCTATAGCAAAATACTCAAAGACCTGAAGAAAGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCTGAGTTGGGCCAGGTTTGTGTGTTTCTGTTCTTCATAAAAACATTCTTCTTATGTTACATGATTTTCGACAAATGCCATTGGTTGCATCATCTCTCATCATTCTTATCATATGTAGGCTGGCATAGTGAAGAAAGAACATATCAAGCTTCATGGATTCTAAGATCTAAGCAACAGTGGCATCAAGATTGA 420 0.3929 MSEFETNIPSAFDPFAEANAEDSGAGTKEYVHVRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCNGTVVQDPELGQVCVFLFFIKTFFLCYMIFDKCHWLHHLSSFLSYVGWHSEERTYQASWILRSKQQWHQD 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01580 139 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 8 83 - -
Vimu5g01580 139 Gene3D - 1 85 - -
Vimu5g01580 139 Pfam Translation initiation factor SUI1 28 79 IPR001950 GO:0003743|GO:0006413
Vimu5g01580 139 SUPERFAMILY eIF1-like 8 81 IPR036877 GO:0003743|GO:0006413
Vimu5g01580 139 CDD eIF1_SUI1 29 82 IPR005874 GO:0003743
Vimu5g01580 139 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 81 IPR001950 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01580 Vimu-Chr5 27261691 27262743 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01580 1 82 Eukaryotic Initiation Factors Gene Family AT1G54290 89.024 1.16e-52 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01580 K03113 - gmx:100784390 166.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01580 5 27261691 27262743 Vimu5g01580 5 27261691 27262743 ECH