Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01577 ATGTCCACCGCCGTTGCAGAGAGAGAAGAAGCCAATGTCGTATGTACTCAAGATGACATCACTGTTGTTTTCCGTGGTTTCGTCGAAACCTCTCGTTCATCTCAGAGTGGCGTCCCCTTAGAGGTTTGTCAACACTTCTTGGTTGGATTTCCCTACAATTGGAGCACATATTCTTCAATTGATAACATAGAATGCGAATGTAACAATAGTGAAAAAGGAATCCCAGTTAAAAGCCTGGCCAATGTTGAAAGCCAAGCTAATGTTGAAAGCCAAGTCAAAAGGATGCAGTGCTGGGAGAAGAGGGCAAAGAGTGCGACAACGATGAGACGGCAAGCAATGACGATGAGAGATAGGGAGGCACGAGAGGTGTGCCGGACAGTTGGATTGGGGGATGTAGATGTTGAAGAGGTAGGTGTGGGAGGGTTGGAGAGGAAGAGGAAGGGGAGAAGGTTTCCACACAACGAGACTACGTGGTTATTAAATGCCACCAGACACGTCCACATAATTTAA 510 0.4667 MSTAVAEREEANVVCTQDDITVVFRGFVETSRSSQSGVPLEVCQHFLVGFPYNWSTYSSIDNIECECNNSEKGIPVKSLANVESQANVESQVKRMQCWEKRAKSATTMRRQAMTMRDREAREVCRTVGLGDVDVEEVGVGGLERKRKGRRFPHNETTWLLNATRHVHII 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01577 169 PANTHER KINETOCHORE-ASSOCIATED PROTEIN KNL-2 HOMOLOG 2 104 - -
Vimu5g01577 169 Pfam SANTA (SANT Associated) 2 57 IPR015216 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01577 Vimu-Chr5 27233886 27234547 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu5g01577 SANTA 1.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01577 - - vra:106755867 145.206