Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01569 ATGGTTGAGCGAAAGCAGTTCAAGACGAAGTTATGTGTTCTGTATCAGAGAGGTCGCTGCAATCGCCATAATTGCTCCTTTGCGCATGGGAGTGCCGAGCTTCGACGATTCCCTGGCTCGTTTAGTGGGATATTTGATGAGTATCGCGACATTTCCTGCATGGGGTTTCGAGTAACAGTTCGTCAGAGTCTGACGGGGAGTGTGATTTTGGAGAGAAATGAATGGAGTGACAGAAGACATAGGAGAAAACAGGGTATTACTGGTCAAAGTGATACTTCTGGAAATTTGAAAGCCTCAGATAGAGTTCAAGATCAAGCTAAAGAAAGAAAAATGCTTTCCTCTGGTTCTAGGAATACACTCGAGGAGCAGCTTAAGAAAGTAGATTCAGGTATCAGTGCTCTACAGAACCGAAAATTCCAGCTAGAGGTCTACCTTGATGAGAGTATTCAAGAAGTGGATAGCCTTAATTCTAGAATTCAGGAGCTTGAAGCTCAATTATGCGAAGAGGATGAGGAGTGCAAAAGAATTACTTCAAGAATAAGGAAGTTTGTTAGAGTTCACAATCATATGTCACAGTTACAAGATGAACTGAAGAGGCAACTTGTCTCAGATATTTCTAAAATTGGTGCGAATGAAGAAGATTTAAGCATTGATATTGTCAGCAATGGTGAAAATACTGGTCTTCTTCCAATTGCCAAACATAATGTGGAGCATAATGATGCATCATCCCACAGAAAAAGGCTGCATATTGAACGAGATGCTTTGGAAGATTTAAAACAAGGTAGTAGTAGTTATGGAAAATGTAATAGATCAAAAGAGGGTCATTCGGTTGAGACAGGTAGAACCAAGAAGCGATCTCGGTGGAATACATCAGATCAATTGAATGATGAGTCTCTCAGGGGCCCAGAAAATGGAACTGAAGTTATTAGAGCTCTAGATCCTGAAGGCAGGCACAAGAGAGGAGTAACATGGATAATAAGCTGGTATATTGAGCTTGGATATGGAAATAAGAAAGTGTGGAATGCTCATCTTTATTTAGCCTCAACGCCATAA 1053 0.4074 MVERKQFKTKLCVLYQRGRCNRHNCSFAHGSAELRRFPGSFSGIFDEYRDISCMGFRVTVRQSLTGSVILERNEWSDRRHRRKQGITGQSDTSGNLKASDRVQDQAKERKMLSSGSRNTLEEQLKKVDSGISALQNRKFQLEVYLDESIQEVDSLNSRIQELEAQLCEEDEECKRITSRIRKFVRVHNHMSQLQDELKRQLVSDISKIGANEEDLSIDIVSNGENTGLLPIAKHNVEHNDASSHRKRLHIERDALEDLKQGSSSYGKCNRSKEGHSVETGRTKKRSRWNTSDQLNDESLRGPENGTEVIRALDPEGRHKRGVTWIISWYIELGYGNKKVWNAHLYLASTP 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01569 350 Coils Coil 117 137 - -
Vimu5g01569 350 ProSiteProfiles Zinc finger C3H1-type profile. 6 32 IPR000571 GO:0046872
Vimu5g01569 350 MobiDBLite consensus disorder prediction 101 115 - -
Vimu5g01569 350 SUPERFAMILY CCCH zinc finger 4 36 IPR036855 GO:0046872
Vimu5g01569 350 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 1 327 IPR045868 GO:0046872
Vimu5g01569 350 Gene3D - 1 36 - -
Vimu5g01569 350 MobiDBLite consensus disorder prediction 79 119 - -
Vimu5g01569 350 MobiDBLite consensus disorder prediction 271 291 - -
Vimu5g01569 350 Coils Coil 145 172 - -
Vimu5g01569 350 MobiDBLite consensus disorder prediction 261 312 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu5g01569 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01569 - - gmx:100811131 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01569 5 27162845 27171800 Vimu5g01569 5 27162845 27171800 ECH