Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01566 ATGTGCAAAGGCGTGGAAGGGAAAAAGCTTGGTGGTTCATGCAGAAGCTTACCACCTGAAGGGAATTCTTCCTTTGCTGCAACAAGAGGTTGTTCAACATCTTGTGAGCTGTGTGGTTTGCAAGCTTCATTGTATTGTCCGGCAGATGATGCATATTTGTGCAGAAAATGTGACGAATGGGTTCACAGAGCCAATTTTTTGGCCCTTAGACATGTGAGGTGCTTTTTGTGCAAAACATGTCAGAACCTTACACACAGATATCTGATTGGAATCTCAGCAGAGATCCTTCTTCCAGTAAGGTGGATTGTGCAGAAACAGAACCTTCCTAATAGCACCACCGATGAATTTTGTTCAAGAACGATTAAGAGACCTTTCATCTTTCTCTAG 387 0.4289 MCKGVEGKKLGGSCRSLPPEGNSSFAATRGCSTSCELCGLQASLYCPADDAYLCRKCDEWVHRANFLALRHVRCFLCKTCQNLTHRYLIGISAEILLPVRWIVQKQNLPNSTTDEFCSRTIKRPFIFL 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01566 128 CDD Bbox1_BBX-like 35 76 - -
Vimu5g01566 128 SMART bboxneu5 30 76 IPR000315 GO:0008270
Vimu5g01566 128 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 34 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01566 Vimu-Chr5 27131941 27133099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01566 1 128 C2C2-CO-like Transcription Factor Family AT3G21890 41.791 1.46e-24 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu5g01566 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01566 - - qsa:O6P43_028701 153.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01566 5 27131941 27133099 Vimu5g01566 5 27131941 27133099 ECH
Vimu4g00919 4 7574954 7575265 Vimu5g01566 5 27131941 27133099 PCT