Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01551 ATGAAGTTGAAAAATATAATGGAATTGACAAGACCCAATTATGCTGTTGTTTATGTCATTCTCCTTTGTGCGTTGGCCCAAGGGGGTTCAGAGGGGAAAGGGGGAAAGGAAGATGAGTCTTCTAGAGTTGGTGGAGGGGCATCATTCATTTATGTTCATAGATTGAAGGTAGAAAATGAGGGTAAACCCTGCAGGAAACAATTGATAGACAGGAACATTGACTTGCATCCTCTGGAAGGGAGTGGTGACATAAAGAGTATAAAAAGTAACATAAACAGAGAAACTAATTCTCTGCCAGTTCATATAAAAAGAAAAACTTTAGACGTCAAAAGAACTAGTACTAGTCCTGTTTCAGAAAAGGGTAGCTCTAGATATTTGTCAACAGAGCATTCTGGATCAACCTTGGGTGTGGAAAGAGGCCATGGAAGAAACTTGCTTGCTGATTCACCAAACAAACAAAAGGCACCAAGTCCTTCTCCTACACCAGCCAGTTCTCCATTATCACCACGTAATGGTACAACACCAGCTAGTTCTCCATTATCATCACGTAATGGTACAACACCAGCCAGTTCTCCATTATCATCACGTAATGGTACAACACCAGCCAGTTCTCCATTATCACCAAGTCATGCACCAACACCAGCCACTTCTCCACCATCACCACCACCTCCAACTCCCAAAAAAACGGATTTACTACTCCCAAAAGATATGTTTGCACCATTTCCACCTCCACCCCGTACAGCTCGTTCTCCTCCCAAAAATTCTAAACCTACAGTACAGACTCCTGCTCCTCCAACATCTAGCGCTAATGACAAAAAGAAGAAAACAATTATTTTAGCTACCACTTTATCAGGTGTTGTAATCTTGATAGGCTTGTTCCTATGCTATCGTGAGACCAAAAAGAAGAGATGTGATAGGGATGACAGGCCTTTGCTCGTATTAACCTCGGATGATTATACTGGCGGTACAAGGAAGGTTGTTCAATTAGGAAATTCTAGAAGGGATGAATATGGCATTTACGATGGAAAGAACCCTTCTAATGTTAGAAATTTGTCCAGTAGGAAGGGTGTAGATGTCAACGTCTCAATGGTTGACATAGCATCATCATCATCAGAAGGCGGAAGAAAACTAAATGTATCCCCTAGTGTAAAGTCTGCCCCTCCTCCTCCTCCTCCCCCACCTCCTCCTCCTCCCCCACCTCCTCCTCCTCCTCCTCCCCCTCCTCCTCCTCCATCTTCTTCCTCTTCTTCTACTCCTTCTCCTGGCCGTACTGCTGGACCACCACCACCACCTCCTCCCGCTAATCGTACACCGCCGCCTCCAAAAGGTGCTCATGCTCCGCCAGCTCCTCCCAAACCAGTTGGAGGTGCGAATCATGGACCACTACTTCCTAAAGAAGGAAGTTCAAATGACGGCGATGCTCATGCTCCAAAACCAAAACTAAAGCCATTTTTTTGGGATAAGGTTAATGCAAAGCCTGGCCAAACGATGGTGTGGCATGAGATCAGTTCAGGATCATTCGTGATCAATGAGGAAATGATGGAGTCTTTATTTGGCTGCGCCAACCAGAACAAGAATGATCGCAAAAGAGACTCATCCTTAGAAAATACAGTGCAATATATTAAGCTTATTGATCCTAGGAAAGCACAGAACTTGTCAATTCTTTTGCGAGCTCTGAACGTCACAACAGAAGAAGTTGTCGATGCTCTTGTAGAAGGAAATGAGATTCCCATTGAGCTGATACAGACGTTGCTGAAGATGGCACCTACACAAGATGAGGAACTGAAGCTAAGGCTATTCACAGGACAACTGCATGAACTAGGCCCAGCAGAGAGGTTTCTCAAAGTGTTGATTGAGATTCCATTCGCTTTCAAACGTCTTGAATGTCTGTTGTTCATGCATAACCTTCAAGAAGATTTCTCAAGCATTAAGGACTCCTTTGCCACGTTAGAGGTGGCTAGCAACGATCTGAGAAAAAGCAGGCTATTCCTGAAACTCCTAGAAGCAGTTCTGAAAACCGGCAACCGTATGAATGACGGAACCTACCGCGGCCGTGCGCAAGCATTCAGGCTCGACACCCTCCTCAAACTCTCCGACGTCAAGGGAACAGACGGCAAGACCACACTCCTGCACTTCGTCGTCGAGGAGATCATCCGCTCCGAGGGAATCCGCGCCGCGCGCAACGAAAGAGCCAGCCGGAGCATCTCTAGCGTCAACACCAGCGACGAATCCGACGAGGGCGAGGAGTCCGAGGAGCACTACCGCAGCGTCGGCCTCCAGGTGGTGTCGAGCCTCGGTGCGGAACTCGAGGCCGTGAAGAAGGCGGCGCTGATAGACGGCGACGCGCTCACCGCGACGGTGTCGAAGCTGGGGCACTCGTTGATGAAGACGCAGAATTTTCTTGACACGGAGATGAAGAACATCGCGGAAGAGAGCGAGTTCCAGAGCAGCATGGAGCATTTCATGGTAAACGCGAGGAAGGAGGTGATGTGGATGGTGGAGGAAGAGAAGAGGATAATGGCGCTGGTTAAGAGCACTGCCGATTACTTTCACGGCAATGCCGGGAAGGATGAAGGTTTGCGTTTGTTCCTAATCGTGCGTGATTTCTTGATCATATTGGAGAAGGTTTGCAAAGAAGTGAAGGCCACGACCATGACGCCGGCGAAGGCTCCCACCACTACCACGAAGAAGCCTAAGACTCCTACGGCTTCTTCCCCTAACGCGCGTAATCAAGATTCGCCAAAGCCATCCACTAATCTCCACAGTAAGCTCTTTCCTGCCATTGCTGGGAGGAGAATGGATTACTCTAGCTCTGATAGCTCCGATGATGAAGACGACTAA 2841 0.4762 MKLKNIMELTRPNYAVVYVILLCALAQGGSEGKGGKEDESSRVGGGASFIYVHRLKVENEGKPCRKQLIDRNIDLHPLEGSGDIKSIKSNINRETNSLPVHIKRKTLDVKRTSTSPVSEKGSSRYLSTEHSGSTLGVERGHGRNLLADSPNKQKAPSPSPTPASSPLSPRNGTTPASSPLSSRNGTTPASSPLSSRNGTTPASSPLSPSHAPTPATSPPSPPPPTPKKTDLLLPKDMFAPFPPPPRTARSPPKNSKPTVQTPAPPTSSANDKKKKTIILATTLSGVVILIGLFLCYRETKKKRCDRDDRPLLVLTSDDYTGGTRKVVQLGNSRRDEYGIYDGKNPSNVRNLSSRKGVDVNVSMVDIASSSSEGGRKLNVSPSVKSAPPPPPPPPPPPPPPPPPPPPPPPPPSSSSSSTPSPGRTAGPPPPPPPANRTPPPPKGAHAPPAPPKPVGGANHGPLLPKEGSSNDGDAHAPKPKLKPFFWDKVNAKPGQTMVWHEISSGSFVINEEMMESLFGCANQNKNDRKRDSSLENTVQYIKLIDPRKAQNLSILLRALNVTTEEVVDALVEGNEIPIELIQTLLKMAPTQDEELKLRLFTGQLHELGPAERFLKVLIEIPFAFKRLECLLFMHNLQEDFSSIKDSFATLEVASNDLRKSRLFLKLLEAVLKTGNRMNDGTYRGRAQAFRLDTLLKLSDVKGTDGKTTLLHFVVEEIIRSEGIRAARNERASRSISSVNTSDESDEGEESEEHYRSVGLQVVSSLGAELEAVKKAALIDGDALTATVSKLGHSLMKTQNFLDTEMKNIAEESEFQSSMEHFMVNARKEVMWMVEEEKRIMALVKSTADYFHGNAGKDEGLRLFLIVRDFLIILEKVCKEVKATTMTPAKAPTTTTKKPKTPTASSPNARNQDSPKPSTNLHSKLFPAIAGRRMDYSSSDSSDDEDD 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01551 946 ProSiteProfiles Formin homology-2 (FH2) domain profile. 471 899 IPR015425 -
Vimu5g01551 946 MobiDBLite consensus disorder prediction 335 354 - -
Vimu5g01551 946 MobiDBLite consensus disorder prediction 887 946 - -
Vimu5g01551 946 MobiDBLite consensus disorder prediction 207 229 - -
Vimu5g01551 946 MobiDBLite consensus disorder prediction 252 272 - -
Vimu5g01551 946 Gene3D Formin, FH2 domain 477 907 IPR042201 -
Vimu5g01551 946 PANTHER FORMIN-RELATED 264 938 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vimu5g01551 946 MobiDBLite consensus disorder prediction 237 251 - -
Vimu5g01551 946 SUPERFAMILY Formin homology 2 domain (FH2 domain) 427 885 - -
Vimu5g01551 946 Pfam Formin Homology 2 Domain 473 872 IPR015425 -
Vimu5g01551 946 MobiDBLite consensus disorder prediction 366 479 - -
Vimu5g01551 946 MobiDBLite consensus disorder prediction 887 920 - -
Vimu5g01551 946 MobiDBLite consensus disorder prediction 383 457 - -
Vimu5g01551 946 MobiDBLite consensus disorder prediction 105 272 - -
Vimu5g01551 946 MobiDBLite consensus disorder prediction 111 134 - -
Vimu5g01551 946 MobiDBLite consensus disorder prediction 729 753 - -
Vimu5g01551 946 MobiDBLite consensus disorder prediction 166 206 - -
Vimu5g01551 946 SMART it6_source 471 888 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01551 Vimu-Chr5 26955206 26960141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01551 460 934 FH2 protein (formin) Gene Family AT5G54650 61.331 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01551 - - vum:124821202 904.434