Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01548 TCGAAGTCTCTGGCCGATACACTGGCGAGATGGAAAGAGTACAATGTTTGGCTTGAATCTAGCAATGAGGCTGAGAAACCAGTTAGGAAAGTTGCTGCCAAAGGATCAAAGAAAGGGTGTATGAAAGGTAAAGGAGGGCCTGAGAACACACTCTGTAACTACAGAGGAGTTAGGCAAAGAGCTTGGGGAAAATGGGTTGCTGAAATCCGGGAGCCAAATAGAGGGAGTAGGCTCTGGTTGGGTACTTTTTCCACTGCCATTAGTGCTGCTCTGGCTTATGATGAAGCAGCTAAGGCAATGTATGGTTCTGTTGCACGTCTTAACTTTCCCAACCTTGAAGTTTTAGCTTTATCTGAGGAATCATCAAGAAATTCCCCAGCTGGTAGTCAATGTGGTTCTGCAGTGATGATATCAGAGAGTTCTGAATGTATGATATTTCCAAATAGCTCTGAGGGAGACAAAGCTAAGGATGATGACATGGAAGGCATCTCCTTATCCTTAACTTAA 507 0.4418 SKSLADTLARWKEYNVWLESSNEAEKPVRKVAAKGSKKGCMKGKGGPENTLCNYRGVRQRAWGKWVAEIREPNRGSRLWLGTFSTAISAALAYDEAAKAMYGSVARLNFPNLEVLALSEESSRNSPAGSQCGSAVMISESSECMIFPNSSEGDKAKDDDMEGISLSLT 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01548 168 SUPERFAMILY DNA-binding domain 53 110 IPR016177 GO:0003677
Vimu5g01548 168 CDD AP2 52 112 IPR001471 GO:0003700|GO:0006355
Vimu5g01548 168 FunFam Ethylene-responsive transcription factor 2 52 111 - -
Vimu5g01548 168 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 2 141 - -
Vimu5g01548 168 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Vimu5g01548 168 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Vimu5g01548 168 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Vimu5g01548 168 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Vimu5g01548 168 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Vimu5g01548 168 MobiDBLite consensus disorder prediction 147 168 - -
Vimu5g01548 168 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01548 Vimu-Chr5 26900262 26900768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01548 1 142 AP2-EREBP Transcription Factor Family AT2G40340 53.425 2.85e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu5g01548 AP2 7.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01548 - - gmx:100783729 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00943 4 7830722 7831318 Vimu5g01548 5 26900262 26900768 PCT