Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01539 ATGGTGAGAACCCCATCTTCTGACAAAAGTGGACTGAGGAAGGGTGCTTGGTCTCCCGAGGAAGATACCAAATTAGTTGCCTATATTACTAGATATGGTCACTGGAATTGGAGCCAACTTCCCAGGTTTGCAGGTCTGGCAAGAAGTGGGAAAAGTTGTAGATTGAGATGGATGAATTATCTCAGGCCTAACGTCAAAAGAGGGAACTTCAGTTCAGAAGAAGAAGATTGCATCATAGGAATCCACAAAATACTTGGTAACAGATGGTCTGCTATTGCGGCTAAGTTACCAGGAAGAACAGATTTGGAAGTAAAAAACCATTGGCACACCACTCTCAAGAAAAGGTGTCATGAAGAAGCACTGGCGAAAGAAGAAACCAGAGCTTCCAAATCATCAAAGAATAAGGAATCCATGGACTTGGTTCCCAACTGTAATGGTGCTGTTGTTCCTTTTCCTGCTACTTCCCAGATTACAAATAGTTCATCAGCCTTATTCTCATTCTCGTCACTGTCATCCTCCAGCAAGGATTGGCTAAGATTGAAGATTGAGCTAAGTAGGCCTGGGTCGGAGATCGCATCAAAGTTCAAGCAGAAGGTAGAGTGGAGTCGGTTTGGAGCAAAGTTGAGCCAGTTCATGCCGAAGATCAAATCGAGTCGGTCAAGGCCGAAGATTGAGCCGAGTCAACCTAAGTCTAATGTCAAGCCGAATCAATCTAAGCCAAATATCGAACAGAGTTGGTCTACGCTAAATATTGATGTCACCTCCCTCTGCGCGGGGAGGTGGATGTCTCGCCCAATGACTTCGGCTCGTGTTGAGTATAGTGCACTGTTGCGCGTATCCTTGAGGAGTCGGGGAGATAGGTCGGAAGTCGCGATGGAAGACGGCTCGAATCGTCTGTTATTGAGAACAGGTTACGATGACGAAATACAAGGAACTGACATTAGTTTACGAAATGTTTGTCGTCGATGA 969 0.4541 MVRTPSSDKSGLRKGAWSPEEDTKLVAYITRYGHWNWSQLPRFAGLARSGKSCRLRWMNYLRPNVKRGNFSSEEEDCIIGIHKILGNRWSAIAAKLPGRTDLEVKNHWHTTLKKRCHEEALAKEETRASKSSKNKESMDLVPNCNGAVVPFPATSQITNSSSALFSFSSLSSSSKDWLRLKIELSRPGSEIASKFKQKVEWSRFGAKLSQFMPKIKSSRSRPKIEPSQPKSNVKPNQSKPNIEQSWSTLNIDVTSLCAGRWMSRPMTSARVEYSALLRVSLRSRGDRSEVAMEDGSNRLLLRTGYDDEIQGTDISLRNVCRR 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01539 322 CDD SANT 69 112 IPR001005 -
Vimu5g01539 322 CDD SANT 16 61 IPR001005 -
Vimu5g01539 322 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu5g01539 322 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vimu5g01539 322 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu5g01539 322 FunFam MYB-related transcription factor 13 66 - -
Vimu5g01539 322 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu5g01539 322 MobiDBLite consensus disorder prediction 214 241 - -
Vimu5g01539 322 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vimu5g01539 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu5g01539 322 SMART sant 66 114 IPR001005 -
Vimu5g01539 322 SMART sant 13 63 IPR001005 -
Vimu5g01539 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vimu5g01539 322 Gene3D - 6 67 - -
Vimu5g01539 322 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 216 - -
Vimu5g01539 322 MobiDBLite consensus disorder prediction 224 241 - -
Vimu5g01539 322 Gene3D - 68 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01539 Vimu-Chr5 26798151 26807483 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01539 1 118 MYB Transcription Factor Family AT1G06180 66.102 7.62e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu5g01539 Myb_DNA-binding 9.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01539 K09422 - gmx:100777107 237.654