Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01538 ATGAACTTGGTTGGGTGGTGTTGGAGGAAGCTCTCCAAACTCCACTCTTGCATAGGAACAGTAGAAGAAGAAGCCCCAGAGTGGCTGACACTCTTGCGGCCTCTAAGTTCTAGAGAGCGATGGTGTTTTGTTGCACCAAGGCAGCATTCTGCTGCTGCATCGCCTCAATGTGCTCTTAAGGCTCAGGCTGAGGAGGAGAAGGAGCTTCAACATCCTCAAGCTCTTACTCCAGGGGGACTTCCTCAACAACATCTGCTCTCATCCAAGTGGATGATCATCGCAAAGGAAAACATACACAAGCAGTACACAACAAGAAAGCAAGGGGTGAAAACCCCATCTTGTGACAAAATTGGACCGAGAAAGGATACTTGGATTCCGGAGGAAGATAGAAAATTGATTGCCTATGTCACCAGATATGGTTTCTGGAAATGGAGACAACTTCCCAGGTTTGCAGGTCTGGCAAGAAGTGGAAAAAGTTGTAGGTTGAGATGGATGAATCATCTGAGGCCAAAAATCAAAAGACACTTCAGTTCAGAAGAAGAAGAATACATCATCAGAATGCACACAAAACTTGGTAACAGATGGTCTGCTATTGCGGCTGAGTTACCAGGAAGAACAGATTTGGAAGTAAAAAACCATTGGCACACCACTCTCAAGAAAAGGTCTCAAGAAGAAGTACTAGCGAAAGAAGAAACTAGGGCTTCAAAATCATCAAAGAATAGAATCCAAGAAATTCAAATGATTCTGCAGACATATCATTCTCGTCACTTTCATCCTCCAGCGACGAGTATTCCTCGGGGCCGTGTTTCCCTTAAGGTGAACAAGCATTTGTCTTAG 837 0.4456 MNLVGWCWRKLSKLHSCIGTVEEEAPEWLTLLRPLSSRERWCFVAPRQHSAAASPQCALKAQAEEEKELQHPQALTPGGLPQQHLLSSKWMIIAKENIHKQYTTRKQGVKTPSCDKIGPRKDTWIPEEDRKLIAYVTRYGFWKWRQLPRFAGLARSGKSCRLRWMNHLRPKIKRHFSSEEEEYIIRMHTKLGNRWSAIAAELPGRTDLEVKNHWHTTLKKRSQEEVLAKEETRASKSSKNRIQEIQMILQTYHSRHFHPPATSIPRGRVSLKVNKHLS 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01538 278 ProSiteProfiles Myb-like domain profile. 173 218 IPR001005 -
Vimu5g01538 278 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 110 242 - -
Vimu5g01538 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 168 222 IPR017930 -
Vimu5g01538 278 CDD SANT 176 218 IPR001005 -
Vimu5g01538 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 120 167 IPR017930 -
Vimu5g01538 278 SUPERFAMILY Homeodomain-like 120 214 IPR009057 -
Vimu5g01538 278 FunFam MYB-related transcription factor 120 173 - -
Vimu5g01538 278 CDD SANT 123 168 IPR001005 -
Vimu5g01538 278 Gene3D - 121 174 - -
Vimu5g01538 278 Gene3D - 175 247 - -
Vimu5g01538 278 SMART sant 172 220 IPR001005 -
Vimu5g01538 278 SMART sant 120 170 IPR001005 -
Vimu5g01538 278 Pfam Myb-like DNA-binding domain 174 217 IPR001005 -
Vimu5g01538 278 Pfam Myb-like DNA-binding domain 122 168 IPR001005 -
Vimu5g01538 278 ProSiteProfiles Myb-like domain profile. 116 168 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01538 Vimu-Chr5 26788339 26793163 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01538 110 264 MYB Transcription Factor Family AT2G31180 47.468 2.99e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu5g01538 Myb_DNA-binding 2.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01538 K09422 - vun:114168966 224.172