Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01537 ATGAAGAAGTGCGAACTGTGTAAGCTTCCGGCCAGGATTTTCTGCGAGTCGGACCAGGCCAGCTTATGCTGGGACTGCGACGCAAAGGTTCACGGCGCAAACTTCTTGGTCGCCAGACACTCGCGAACCCTCCTCTGCCGTACGTGCCACTCTCCCACGCCGTGGAAGGCCGCCGGAGCCAGACTCTCTAACGCCGCCTCAGTCTGCCACCGCTGCGCCGCCTCCGCCGCCGAAGAACCAGACGAGACCGAATCCGGCAATGACGAGGAACCAAACACGGAGGATGACGATGTCTCCGGCGAGGAAGACGGCGAGAACCAGGTCGTGCCGTGGTCCTCCATACCGCCTCCGCCGGCGAGCTCCTCCAGCAGCGAGTGGTCTTCGTTCAGCGGATGCAAAATCGATGACGACGAAGGTGCTTCTGTTTCCGTATGTGAACCGGAAACGACAACATCATCGTTGAAACGACAACGCGAGAACGACGACGTATCAGGCCGTGATCCGCAGGGGTTTGGAAGGGTTGCGCATCTGAACGGAGGTGGAGGTGGC 549 0.6047 MKKCELCKLPARIFCESDQASLCWDCDAKVHGANFLVARHSRTLLCRTCHSPTPWKAAGARLSNAASVCHRCAASAAEEPDETESGNDEEPNTEDDDVSGEEDGENQVVPWSSIPPPPASSSSSEWSSFSGCKIDDDEGASVSVCEPETTTSSLKRQRENDDVSGRDPQGFGRVAHLNGGGGG 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01537 183 MobiDBLite consensus disorder prediction 152 166 - -
Vimu5g01537 183 CDD Bbox1_BBX-like 3 45 - -
Vimu5g01537 183 Pfam B-box zinc finger 2 40 IPR000315 GO:0008270
Vimu5g01537 183 MobiDBLite consensus disorder prediction 76 183 - -
Vimu5g01537 183 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 141 - -
Vimu5g01537 183 SMART bboxneu5 1 45 IPR000315 GO:0008270
Vimu5g01537 183 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Vimu5g01537 183 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01537 Vimu-Chr5 26771649 26772308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01537 2 104 C2C2-CO-like Transcription Factor Family AT5G54470 54.369 7.93e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu5g01537 zf-B_box 8.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01537 - - vun:114168631 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01537 5 26771649 26772308 Vimu5g01537 5 26771649 26772308 ECH
Vimu4g00953 4 7920793 7921654 Vimu5g01537 5 26771649 26772308 PCT