Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01535 ATGTTGAACAAGAAACCACCGTTGTTATGGCTTTCTCTCCTCATCACATGCTTCTTCTCTTTCCACACCTGTACTTCACTCGCAGCTTTGACCACCATCTCAGCAAATCAATCTCTCTCTGGGGATCAAACTCTTGTCTCCCAAAATGGAACCTTTGAATTGGGTTTCTTCACCACAGATGGTAATTTAGTGGTATTAGACCAGTCCCAAAATATAGTTTGGTCAACCAATTTGAGTTCTCCTAGCTCAGGTTCTGTGGTAGCCGTGCTTCTAGATTCTGGGAATCTTATATTAAGTGATAGGCCTAATGCACCGGCAACTGATGCTATGTGGCAGAGTTTTGATCACCCCACAGACACGTGGCTTCCCGGTGGCAAGATAAGTTTGAACAACAAAACAAAGAAGCCACAGTATCTGACTTCATGGAAGAATGTTGAAGATCCTGCAACGGGAATGTTCTCTCTTGAACTAGACCCTGAAGGAAGCAATTCGTATTTGATTCGTTGGAATAGAACTGAGCAGTATTGGTCAAGTGGTTCTTGGAATGGACACATTTTCAGCTTGGTTCCTGAGATGAGACTAAACTACATCTACAATTTCACCTTTGTGTCCAACGAGAACGAGAGCTACTTCACCTACTCCTTGTATAACGAGTCTATTATATCTCGCTTTTTTATGGATGTCTCGGGTCAGATTAAGCAACTGACGTGGCTGGAGAATGCTCAGCAGTGGAATTTGTTCTGGTCTCAGCCTCGGCAACAGTGTGAGGTGTATGCCTTCTGTGGTGGATTTGGGACCTGCACTGAGAATTCCAAGCCATATTGTAGTTGTTTGACTGGGTATGAGCCAAAGTCACAATCTGATTGGAATCTTACGGATTACTCAGGGGGGTGTGTGAGAAAGACGGAGTTGCAATGTGCCTCACCAAACTCCTCTAACAAGGACACTGACAGGTTCCTTTCAATTCTCAACATGAAATTGCCCAATCATTCACAATCCATAGGAGCCGGGAATGTTGGGGAATGTGAAACAACATGCTTAAGTAACTGTTCTTGTACTGCATATGCTTATGACAATAATGGTTGTTCAATTTGGTATGGTGATCTCTTGAACCTGCAACAGCTTACTCAAGATGACAGCAGTGGGCAGACTTTGTTTCTCAAACTTGCAGCGTCTGAGTTTCATGATTCTAAAAGCAATAAAGGGACACTCATTGGTGCTGTTGCTGGAGCTGTTGGTGGTGTGGTGGTTCTTCTAATTGTTTTGGTGTTTGTGATTCTGCGGCGCAGAAAGAGACATGTTGGGATAGGAACATCTGTGGAGGGCTCATTGGTGGCATTTGGGTATAGGGATTTGCAAAATGCCACGAAGAATTTCTCAGAGAAACTGGGAGGAGGGGGTTTTGGCTCTGTCTTCAAAGGAACATTGTCTGATTCTAGTGTCATTGCAGTAAAGAAGCTTGAAAGCATTAGCCAAGGTGAGAAGCAGTTCAGAACAGAAGTGAGCACAATTGGGACAGTCCAACATGTGAATCTTGTAAGGCTTCGCGGGTTCTGCTCCGAAGGTACTCAAAAACTTCTGGTTTATGATTACATGCCAAATGGTTCCTTGGATTCGAAAATGTTTCAGGAAGATGGATCAAAGGTGTTGGATTGGAAACTGAGGTACCAAATTGCTCTTGGAACAGCAAGAGGGTTGACTTACCTTCACGAGAAGTGTAGAGACTGCATCATACATTGTGATGTGAAGCCAGAAAACATTCTCCTTGATGCTGATTTTGTTCCAAAGGTGGCAGACTTTGGCCTTGCAAAGCTGGTTGGAAGAGACTTCAGCAGGGTCCTCACTACCATGAGAGGGACAAGAGGTTATCTTGCCCCAGAGTGGATATCAGGTGTGGCTATCACTGCAAAAGCTGATGTCTACAGCTATGGAATGATGCTTTTCGAGTTTGTGTCAGGTAGGAGGAACTCTGAGGCATCGAAAGATGGCCAAGTGAGGTTCTTTCCTACTTTTGCTGCAAACACTGTCCACCAAGAAGGGAATGTGCTTAGCTTGTTGGACCCTAGGTTGGAGGGAAATGCTGACATTGAAGAGGTCATTAGAGTCATAAAAATTGCTTCATGGTGTGTCCAAGATGATGAATCTCACAGGCCTTCAATGGGTCAGGTGGTTCAAATCCTTGAAGGGTTCTTGGATGTGACTTTGCCTCCAATTCCAAGGACCCTTCAAGCCTTTGTTGACAACCATGAGAACATAGTTTTCTTCACTGACTCCAGCTCCACACAGAGTTCACAGGTAAAGAGTACCTCCTCTCAAGCCAAGAGCAACACCTCATCCAATAATTCTCAGTCCTCATGA 2358 0.4436 MLNKKPPLLWLSLLITCFFSFHTCTSLAALTTISANQSLSGDQTLVSQNGTFELGFFTTDGNLVVLDQSQNIVWSTNLSSPSSGSVVAVLLDSGNLILSDRPNAPATDAMWQSFDHPTDTWLPGGKISLNNKTKKPQYLTSWKNVEDPATGMFSLELDPEGSNSYLIRWNRTEQYWSSGSWNGHIFSLVPEMRLNYIYNFTFVSNENESYFTYSLYNESIISRFFMDVSGQIKQLTWLENAQQWNLFWSQPRQQCEVYAFCGGFGTCTENSKPYCSCLTGYEPKSQSDWNLTDYSGGCVRKTELQCASPNSSNKDTDRFLSILNMKLPNHSQSIGAGNVGECETTCLSNCSCTAYAYDNNGCSIWYGDLLNLQQLTQDDSSGQTLFLKLAASEFHDSKSNKGTLIGAVAGAVGGVVVLLIVLVFVILRRRKRHVGIGTSVEGSLVAFGYRDLQNATKNFSEKLGGGGFGSVFKGTLSDSSVIAVKKLESISQGEKQFRTEVSTIGTVQHVNLVRLRGFCSEGTQKLLVYDYMPNGSLDSKMFQEDGSKVLDWKLRYQIALGTARGLTYLHEKCRDCIIHCDVKPENILLDADFVPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMLFEFVSGRRNSEASKDGQVRFFPTFAANTVHQEGNVLSLLDPRLEGNADIEEVIRVIKIASWCVQDDESHRPSMGQVVQILEGFLDVTLPPIPRTLQAFVDNHENIVFFTDSSSTQSSQVKSTSSQAKSNTSSNNSQSS 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01535 785 FunFam Serine/threonine-protein kinase 424 531 - -
Vimu5g01535 785 ProSiteProfiles Protein kinase domain profile. 457 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01535 785 Pfam PAN-like domain 313 371 IPR003609 -
Vimu5g01535 785 SUPERFAMILY Protein kinase-like (PK-like) 443 765 IPR011009 -
Vimu5g01535 785 PIRSF SRK 58 782 IPR024171 GO:0004674
Vimu5g01535 785 PIRSF SRK 3 62 IPR024171 GO:0004674
Vimu5g01535 785 ProSiteProfiles PAN/Apple domain profile. 306 390 IPR003609 -
Vimu5g01535 785 Gene3D Transferase(Phosphotransferase) domain 1 532 734 - -
Vimu5g01535 785 Gene3D - 26 180 IPR036426 -
Vimu5g01535 785 CDD PAN_AP_plant 302 390 - -
Vimu5g01535 785 CDD B_lectin 36 117 IPR001480 -
Vimu5g01535 785 SUPERFAMILY alpha-D-mannose-specific plant lectins 39 147 IPR036426 -
Vimu5g01535 785 SMART ntp_6 314 389 IPR003609 -
Vimu5g01535 785 CDD STKc_IRAK 463 730 - -
Vimu5g01535 785 FunFam Serine/threonine-protein kinase 532 735 - -
Vimu5g01535 785 Pfam S-locus glycoprotein domain 176 285 IPR000858 GO:0048544
Vimu5g01535 785 ProSitePatterns Serine/Threonine protein kinases active-site signature. 577 589 IPR008271 GO:0004672|GO:0006468
Vimu5g01535 785 ProSitePatterns Protein kinases ATP-binding region signature. 463 486 IPR017441 GO:0005524
Vimu5g01535 785 ProSiteProfiles Bulb-type lectin domain profile. 1 111 IPR001480 -
Vimu5g01535 785 MobiDBLite consensus disorder prediction 760 785 - -
Vimu5g01535 785 SMART serkin_6 457 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01535 785 PANTHER OS07G0415500 PROTEIN 57 739 - -
Vimu5g01535 785 Pfam D-mannose binding lectin 57 143 IPR001480 -
Vimu5g01535 785 SMART blect_4 36 117 IPR001480 -
Vimu5g01535 785 Pfam Protein kinase domain 460 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01535 785 Gene3D Phosphorylase Kinase; domain 1 424 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01535 Vimu-Chr5 26724444 26726924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01535 439 737 Receptor kinase-like Gene Family AT5G20050 45.079 2.56e-79 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu5g01535 Pkinase 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01535 - - gmx:100782119 1305.43