Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01533 ATGGTGAGAACCCCTTACTGTGACAAAAGTGGACTGAGAAAAGGAACATGGACACCAGAAGAAGATTGGAAGTTGATTTCTTATGTCACTGTACATGGCCACAAGAATTGGCGCCAATTGCCTAAGTTTGCTGGTAATACAACTGCATCAAGCTGCAGATTGAGGTGGATGAATTACCTAAGGCCAGGCATCAAAAGAGGGAACTACACTTATGAAGAAGAAGAGATAATCATCAAACTGCACCAAATTCATGGAAACAGGTGGTCAGTGATTGCCTCCCACTTACCTGGAAGATCAGATAACGAGATAAAAAATCACTGGCATGCACATCTTAAGAAGCGCTTTCAACACAATTCAGAAACAAATGAAAAAGTTGAAGCCTCCACCTCAAAACAGCACTCCCTAGTAGAATCCATTCAAGAGGAATCTGGGGAAGTTGTTGCAAGCAGTTTCCTGAACAGTTGCCTAGCTACTTCCCAAACTCCTCCTGACAGTGATTCTCCATCGCCCCAGCACACATCATTGAGAGATGCTTTGTGCATGATATCTGAACTAGAACCTGAAGCAGACAGTAATGGGAATTTGGCTACTGATAACTTTGCTGACTTTATGAAGCAAAACACAGATCCTATCAGTGCATATTCTTGGGAAGAACTTTATGAAATTTCATACTTATGTGAATTTCTTGCTCCTTCGTACTGA 702 0.4174 MVRTPYCDKSGLRKGTWTPEEDWKLISYVTVHGHKNWRQLPKFAGNTTASSCRLRWMNYLRPGIKRGNYTYEEEEIIIKLHQIHGNRWSVIASHLPGRSDNEIKNHWHAHLKKRFQHNSETNEKVEASTSKQHSLVESIQEESGEVVASSFLNSCLATSQTPPDSDSPSPQHTSLRDALCMISELEPEADSNGNLATDNFADFMKQNTDPISAYSWEELYEISYLCEFLAPSY 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01533 233 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vimu5g01533 233 CDD SANT 68 111 IPR001005 -
Vimu5g01533 233 ProSiteProfiles Myb-like domain profile. 9 60 IPR001005 -
Vimu5g01533 233 Gene3D - 14 65 - -
Vimu5g01533 233 FunFam MYB-related transcription factor 13 65 - -
Vimu5g01533 233 SMART sant 65 113 IPR001005 -
Vimu5g01533 233 SMART sant 13 62 IPR001005 -
Vimu5g01533 233 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Vimu5g01533 233 CDD SANT 16 60 IPR001005 -
Vimu5g01533 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Vimu5g01533 233 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 169 - -
Vimu5g01533 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 60 IPR017930 -
Vimu5g01533 233 Gene3D - 68 140 - -
Vimu5g01533 233 Pfam Myb-like DNA-binding domain 14 60 IPR001005 -
Vimu5g01533 233 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01533 Vimu-Chr5 26677659 26679014 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01533 1 184 MYB Transcription Factor Family AT1G06180 48.404 1.19e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu5g01533 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01533 K09422 - gmx:106799185 299.286