Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01529 ATGATGGTGAGAACCCCGAGCAGTGACAAAAATGGACTGAAGAGAGGAACATGGACACCAGAGGAAGACAAGAAGTTGGTTGATTATATTACTAGGTATGGCCACTGGAATTGGCGCCTTCTCCCCCAGTTCGCAGGTAATCTAGCAACCAAAGAATTTGGTTTTAAGAGTTTGTTGTTGTCAGGTCTTGCGAGATGTGGAAAGAGTTGCAGACTTAGGTGGTTGAATTACCTAAGGCCAAACCTGAAAAGAGGAAACTACACTGAGGAAGAGAAAGAAACTATCATCAAGCTGCACCGACATCTTGGAAACAGATGGTCTGCTATTGCTGCACAGATTCCAGGAAGAACAGACAATGAAATAAAAAACTACTGGCACACCAACCTCAAGAAACGATTTGAACAAGACAGAGCCACAGAATCTCAAGTTTCAAACTCATGTGAACGATCCTCAACATCAACAACAACAACTGAAGCAAGTGCAAATACTTTCCAAAGCTTTAACTCCACGAAAGATTGTTCCCTATTTTCCCAGCATTCATCATCCTCTACAACAAGCGCAGAATTTAATACTGTAACCATCAACGAAAATCTGGATCTGCAAGATGAATTTTCCTTTTGGGACGCTGACACAGATCTTGTGAGTGCCAATTTCTGGTTAGAGTCATATATCCATGATATTTCATATGCAGCTACTGAGCCTGAGTTCTTCACTTTTGATGCACAACTTTGGAGCCATGATAACTGA 747 0.4163 MMVRTPSSDKNGLKRGTWTPEEDKKLVDYITRYGHWNWRLLPQFAGNLATKEFGFKSLLLSGLARCGKSCRLRWLNYLRPNLKRGNYTEEEKETIIKLHRHLGNRWSAIAAQIPGRTDNEIKNYWHTNLKKRFEQDRATESQVSNSCERSSTSTTTTEASANTFQSFNSTKDCSLFSQHSSSSTTSAEFNTVTINENLDLQDEFSFWDADTDLVSANFWLESYIHDISYAATEPEFFTFDAQLWSHDN 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01529 248 CDD SANT 86 129 IPR001005 -
Vimu5g01529 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 78 IPR017930 -
Vimu5g01529 248 Pfam Myb-like DNA-binding domain 15 78 IPR001005 -
Vimu5g01529 248 Pfam Myb-like DNA-binding domain 84 129 IPR001005 -
Vimu5g01529 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Vimu5g01529 248 ProSiteProfiles Myb-like domain profile. 10 78 IPR001005 -
Vimu5g01529 248 MobiDBLite consensus disorder prediction 139 159 - -
Vimu5g01529 248 MobiDBLite consensus disorder prediction 136 159 - -
Vimu5g01529 248 CDD SANT 17 78 IPR001005 -
Vimu5g01529 248 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Vimu5g01529 248 SUPERFAMILY Homeodomain-like 12 125 IPR009057 -
Vimu5g01529 248 Gene3D - 86 160 - -
Vimu5g01529 248 Gene3D - 15 83 - -
Vimu5g01529 248 SMART sant 14 80 IPR001005 -
Vimu5g01529 248 SMART sant 83 131 IPR001005 -
Vimu5g01529 248 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01529 Vimu-Chr5 26622139 26626643 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01529 4 168 MYB Transcription Factor Family AT1G79180 50.000 9.60e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu5g01529 Myb_DNA-binding 2.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01529 K09422 - gmx:100778518 318.931