Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01528 ATGGTGAGAACTCCGTCTTGTGACAAAAGTGGACTGAGAAAGGGAACTTGGACTCCCGAAGAAGATAGGAAATTGGTTGCATATGTCACTAGGTATGGCTGCTGGAATTGGCGCCAACTTCCCAAGTTTGCAGGTCTTGCAAGGTGTGGGAAAAGTTGCAGATTGAGATGGATGAACTATCTAAGGCCTAATCTCAAAAGAGGGAACTTCACTCCACAAGAAGAAGAATGCATCATCAGAATGCTCAAAAATCTTGGTAACAGATGGTCGGCTATTGCGGCTGAGTTACCAGGAAGAACAGATAACGAGATAAAAAACCATTGGCACACCGCTCTCAAGAAAAAGTATCAAAATACAGTTAGAAATGAAGATGCCAGAGCCTCCAAATCAAAGAAAAAAGAATCCAGCGCAGGGAGAGACTTAGTTCACAACAAAAATGGTGTTACTGTTAGACTTCCAGCCACTTCCCAGATTTCAGATAATTCATCATTCTCGCCGGTTTCATCCTCCAGCAGCGAGTTTTCCTCCATAACTTCAGATCTTTCCAGTTCTACTAGCATGGAAAATTTGTTGTTTGAAGATGACTTGGGTTTTCTTGATTCGTATGTGAATGAAAGTTTCTGGAAAGAACTGAATCTTGATGGTGCACCTTGTGAATCAAGAGATAATACTTCTACAGAGATGGTTGATTCTTGTGCATTATCTCCGCATCAATCATCGAGTGAAAGTGTGGTTGTGGACAATGACTTTGGCAGCTTTCTGGATGCATATGGAGAGGTAACATTCGATAACTTTTGGTCACAACCGTATGTGGCTGACGTCTCCCACGTTCCAAGCGAGCTACTTGTTCCCTCCGTGGTAGAATCTGAATATTTTACTCCAATCTACGATGATCTGTGGGGTCAAAGTCATTTTGTACAATCAAAGTTTTAG 933 0.4202 MVRTPSCDKSGLRKGTWTPEEDRKLVAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYLRPNLKRGNFTPQEEECIIRMLKNLGNRWSAIAAELPGRTDNEIKNHWHTALKKKYQNTVRNEDARASKSKKKESSAGRDLVHNKNGVTVRLPATSQISDNSSFSPVSSSSSEFSSITSDLSSSTSMENLLFEDDLGFLDSYVNESFWKELNLDGAPCESRDNTSTEMVDSCALSPHQSSSESVVVDNDFGSFLDAYGEVTFDNFWSQPYVADVSHVPSELLVPSVVESEYFTPIYDDLWGQSHFVQSKF 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01528 310 Gene3D - 14 66 - -
Vimu5g01528 310 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vimu5g01528 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vimu5g01528 310 CDD SANT 16 61 IPR001005 -
Vimu5g01528 310 CDD SANT 69 110 IPR001005 -
Vimu5g01528 310 MobiDBLite consensus disorder prediction 119 154 - -
Vimu5g01528 310 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vimu5g01528 310 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu5g01528 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu5g01528 310 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu5g01528 310 Gene3D - 68 141 - -
Vimu5g01528 310 SMART sant 66 114 IPR001005 -
Vimu5g01528 310 SMART sant 13 63 IPR001005 -
Vimu5g01528 310 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 221 - -
Vimu5g01528 310 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu5g01528 310 MobiDBLite consensus disorder prediction 119 140 - -
Vimu5g01528 310 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01528 Vimu-Chr5 26593957 26595121 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01528 1 211 MYB Transcription Factor Family AT2G31180 46.948 1.64e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu5g01528 Myb_DNA-binding 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01528 K09422 - gmx:100777107 421.394