Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01526 ATGGTGAGAACCCCATCTTGTGACAAAAGTGGACTCAGAAAGGGTACTTGGACTCCTGAGGAAGATAGAAAATTAATTGCTTATGTTACAAGATATGGTTCCTGGAATTGGCGACAACTTCCCAGGTTTGCAGGTCTGGCAAGATGTGGGAAAAGTTGTAGATTGAGATGGATGAATTATCTCAGGCCTAACGTCAAAAGAGGGAACTTCACTCCACAAGAAGAAGATTGCATCATAAGAATGCACAAAAAACTTGGTAACAGGTGGTCGGCTATTGCGGCTGAGTTACCAGGAAGAACAGATAACGAAATAAAAAACCATTGGCACACTACTCTGAAGAAAAGGTCTGAACAAAATACAGTAACAAATGAAGAAGCTAGAGCCTTCAAATCAAAGAATAAAGAATCCAACCCCAATGGTTTTACTGTCACTCTTCCATCCAATTCCGGGACTTCTGATAATGCATCAGCCTCAGTCTCACCACTCTCATCCTCCAGCAGCGTGTTTTCCTCCACAGCTTCAGATGATTGCAGTGCTGCCAGCATGAAAAGTTTGGTTTTTGAAGATGACGACTTTGGCTTTCTGGATTCATACATGGAGCCGATGAATGATAGTTTCTGGAGCGAGCTAAATCTGGATGACATCTCCTACAGTGCAGCATGTGAAATAGTTTCAGGAGATACCAATGGCGCAATTCAAAGCACTGATACTAGCGTTAATGATTGTTGTGCAATGTCTCCGCATGGATCAAGCAGCGAAAGTATTGTTATCGATAATGGCTCTGGCAGTTTTCTCGATGCATATGCAGAGGCAACAGTTGAGAACCTTTGGATGCAGCAATATATGGCTGAGATGTCCCACGTTCCAAGCGAACTTCTTGTCCCTTCCGTTGTAGAATCTGAATATTTTACTCCAATCTACGATGATCTCTGGGGATGA 939 0.4281 MVRTPSCDKSGLRKGTWTPEEDRKLIAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWMNYLRPNVKRGNFTPQEEDCIIRMHKKLGNRWSAIAAELPGRTDNEIKNHWHTTLKKRSEQNTVTNEEARAFKSKNKESNPNGFTVTLPSNSGTSDNASASVSPLSSSSSVFSSTASDDCSAASMKSLVFEDDDFGFLDSYMEPMNDSFWSELNLDDISYSAACEIVSGDTNGAIQSTDTSVNDCCAMSPHGSSSESIVIDNGSGSFLDAYAEATVENLWMQQYMAEMSHVPSELLVPSVVESEYFTPIYDDLWG 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01526 312 CDD SANT 69 112 IPR001005 -
Vimu5g01526 312 MobiDBLite consensus disorder prediction 115 132 - -
Vimu5g01526 312 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu5g01526 312 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vimu5g01526 312 CDD SANT 16 61 IPR001005 -
Vimu5g01526 312 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vimu5g01526 312 Gene3D - 6 66 - -
Vimu5g01526 312 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu5g01526 312 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 211 - -
Vimu5g01526 312 SMART sant 13 63 IPR001005 -
Vimu5g01526 312 SMART sant 66 114 IPR001005 -
Vimu5g01526 312 FunFam Transcription factor MYB14 69 141 - -
Vimu5g01526 312 Gene3D - 68 139 - -
Vimu5g01526 312 MobiDBLite consensus disorder prediction 115 165 - -
Vimu5g01526 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vimu5g01526 312 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu5g01526 312 FunFam MYB-related transcription factor 13 66 - -
Vimu5g01526 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu5g01526 312 MobiDBLite consensus disorder prediction 133 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01526 Vimu-Chr5 26572386 26573567 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01526 1 210 MYB Transcription Factor Family AT2G31180 48.095 7.31e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu5g01526 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01526 K09422 - gmx:778184 455.677