Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01525 ATGGTAAGAACTCCTTTCTATGACAAAAATGGAGTGAAGAAAGGTGCATGGAGCAGAGAAGAAGATGATAAGTTAAGAGCTTATGTTCACACATATGGTCACTCTAATTGGCGTCAACTCCCCAAGTTTGCAGGTTTAGCAAGGTGTGGGAAAAGTTGCAGACTTCGTTGGTTGAATTACTTGAGACCAAATCTAAAACACGGGAACTACACCCCAGAGGAAGAAGAAACAATCATCAGATTACACCAACAATTTGGAAATAGATGGTCCTTGATTGCTGAAAAACTTCCTGGAAGAACAGACAACGAGGTAAAGAACTATTGGCATAGCCAGCTGAAGAAGAGCTTGAAGAGAAGTGAAATGACAGCATCTGAGTTGAAGTTGAAGGAAGGTGATAACAAGAGTTATGAAGGAAATTTAAAGGAAAATTGTGAAAAGCTAGGTGGCAACAGTGGTGATGATGATATCTTCCCTCATATTTTAGAAAGTTCATTGGCCATTTCCGCAGAAACAGCAGAAGGAGACAACTATTCTCTTATCACTAGTGCTGAAGAAGATGCTCTTCCTCCATTACTATCATACAAACAATTCAGCGGCGATTTTTGGTCTGAGCCATTCCTCCTAGAAGATAATATTCATACTTTTAAAGATGACATTTTCAGTGGTAAAGGAATGGCTTTGTTAATTCCAAACTTCGATGCTGCATATTTCTTGTAA 717 0.3891 MVRTPFYDKNGVKKGAWSREEDDKLRAYVHTYGHSNWRQLPKFAGLARCGKSCRLRWLNYLRPNLKHGNYTPEEEETIIRLHQQFGNRWSLIAEKLPGRTDNEVKNYWHSQLKKSLKRSEMTASELKLKEGDNKSYEGNLKENCEKLGGNSGDDDIFPHILESSLAISAETAEGDNYSLITSAEEDALPPLLSYKQFSGDFWSEPFLLEDNIHTFKDDIFSGKGMALLIPNFDAAYFL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01525 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vimu5g01525 238 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Vimu5g01525 238 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu5g01525 238 CDD SANT 16 61 IPR001005 -
Vimu5g01525 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu5g01525 238 FunFam Transcription factor RAX3 7 67 - -
Vimu5g01525 238 Gene3D - 69 143 - -
Vimu5g01525 238 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 144 - -
Vimu5g01525 238 SMART sant 13 63 IPR001005 -
Vimu5g01525 238 SMART sant 66 114 IPR001005 -
Vimu5g01525 238 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu5g01525 238 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu5g01525 238 Gene3D - 13 66 - -
Vimu5g01525 238 CDD SANT 69 109 IPR001005 -
Vimu5g01525 238 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01525 Vimu-Chr5 26552957 26554667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01525 1 135 MYB Transcription Factor Family AT2G31180 60.741 1.18e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu5g01525 Myb_DNA-binding 7.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01525 K09422 - gmx:100781032 233.032