Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01524 ATGGTAAGAGCTCCCTATTTTGATAAAAATGGAACAAAGAAAGGAGCATGGTGTGAAGAAGAGGACAAGAAGCTTATTGCCTATGTTCAGAAACATGGCCACCCCAATTGGCGTCAACTTCCAAAGTTTGCAGGGTTGCAAAGATGTGGAAAAAGTTGCAGACTTCGATGGATGAATTACCTCAGGCCAAATCTAAAACGAGGGAACTACACCCCCAAGGAAGAGCAAATCATCAATGATTTGCATAAAAAGCATGGAAATAAATGGTCTCTGATTGCTGAAAGTTTACCCGGAAGAACAGACAATGAGATAAAGAACTATTGGCACAGCCACCTAAAGAAGTTCGAAAACAGCAACAATAACAGCTCTTGTGATGAAGATTTGAAGTCCAATGGATGCAAAGAGTTTGAAATGGAAATGAACGAGGCTCATAGTGTTGAATCTCACCACATTTTGGAGAGTTCAGTGTCAATTTCCTCAGAAACTTCCTACACCGACCACAATTCTCCTTGTCTTTCATTTTGTTCAAGTCACACTGAATCAACCATGAACTTGTGCAAGGAAGAAGAAAGTGTTGCTTCATGGGAAACATTGGATTTAGGGTTTAGTAGCAATTTCTGGACTGAACCCTTTATTTCAGAAAACGCACTTGATGAAGATTATTTTCACATTTCCTCTTATGGGATAGAACCATTTTACTTGTGGTAA 708 0.3941 MVRAPYFDKNGTKKGAWCEEEDKKLIAYVQKHGHPNWRQLPKFAGLQRCGKSCRLRWMNYLRPNLKRGNYTPKEEQIINDLHKKHGNKWSLIAESLPGRTDNEIKNYWHSHLKKFENSNNNSSCDEDLKSNGCKEFEMEMNEAHSVESHHILESSVSISSETSYTDHNSPCLSFCSSHTESTMNLCKEEESVASWETLDLGFSSNFWTEPFISENALDEDYFHISSYGIEPFYLW 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01524 235 CDD SANT 69 112 IPR001005 -
Vimu5g01524 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vimu5g01524 235 FunFam MYB-related transcription factor 13 66 - -
Vimu5g01524 235 CDD SANT 16 61 IPR001005 -
Vimu5g01524 235 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 186 - -
Vimu5g01524 235 SMART sant 13 63 IPR001005 -
Vimu5g01524 235 SMART sant 66 114 IPR001005 -
Vimu5g01524 235 Gene3D - 7 66 - -
Vimu5g01524 235 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu5g01524 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu5g01524 235 Gene3D - 69 114 - -
Vimu5g01524 235 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vimu5g01524 235 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu5g01524 235 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vimu5g01524 235 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01524 Vimu-Chr5 26526822 26528169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01524 1 198 MYB Transcription Factor Family AT2G31180 46.635 3.76e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu5g01524 Myb_DNA-binding 2.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01524 K09422 - gmx:100782270 371.318