Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01522 TGCTTTTTCTTGCCTTTTAAGCCCCATTCAGTACTACCTTCTTCCACCACCACTTCGTCCATGGAGTTTGACCTTGAAAACCCTTTGGAAAATCTTCATTCCGATGCTGTCTCTTATCTCTTCCTCATTGAATCTGACCACACCCTATCACAGAATCATTCTCACACTCTCAAAGCTAGAGATCTTGACATCTCTGTCAGAAGAGAACTTGTTTCCTTAATCGCAAAGTTGTCCTGCACTTTGGATCCGGCTTTGTCTTATCTTGCTACCAACTATCTGGATCGGTTCCTAGCCAGCCAAGGGATTACGCAACCGAAGTCATGGACCCTCAGGCTCATTGCTGTCTCTTGTATTTCTCTAGCTGTCAAGATGATGAGAACTGAATGCCCAGATATTCAGGATATTTTGAATCAAAGTGATGGGGGCATCATATTTGAGACACAAACAGTGCGAAGAATGGAAGCACTTATCTTGGGAGCATTACAATGGAGAATGCGGTCGATCACTCCATTCTCTTTCATACCTTTCTTCGTTGCCTTGATGGGGCTCCAAGGCTCACCAACGGGAAGGGTTCTGAAAAACCGTGCTTCTGAAATCATATTCATGTCACAAAGAGAGATAAGACTTTGGGAGTTCAAGCCATCTATGATTGCAGCATCTGCTCTTTTGTGTGCTTCTCAAGAGTTGTTTCCTTTTCAATATCCGTCCTTCTTAAAAGCAATAACCGAGTCTTCATATGTAAATAAAGAAAGCGTGGAGCAGTGCTACAAAGTGATACAAGACATAGCCATAGAGGAGGAGTACGAGTCTGCGTTGAATGGGGTTTCAAGGTCAGACACACCGATTAATGTGTTGGACCATCATTTTCTCAGTTCAGAAAGTGAAAAAACCAACGGAATCACCGTTGATGATTCTCCTCTGAGACAAGAGAGGGACCTCAAAAGAAGGAAAATCACTCCATGTGGAAACAATCCAACGATCCACAACTCTTGA 993 0.432 CFFLPFKPHSVLPSSTTTSSMEFDLENPLENLHSDAVSYLFLIESDHTLSQNHSHTLKARDLDISVRRELVSLIAKLSCTLDPALSYLATNYLDRFLASQGITQPKSWTLRLIAVSCISLAVKMMRTECPDIQDILNQSDGGIIFETQTVRRMEALILGALQWRMRSITPFSFIPFFVALMGLQGSPTGRVLKNRASEIIFMSQREIRLWEFKPSMIAASALLCASQELFPFQYPSFLKAITESSYVNKESVEQCYKVIQDIAIEEEYESALNGVSRSDTPINVLDHHFLSSESEKTNGITVDDSPLRQERDLKRRKITPCGNNPTIHNS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01522 330 SUPERFAMILY Cyclin-like 33 165 IPR036915 -
Vimu5g01522 330 PANTHER CYCLINS 34 270 IPR039361 -
Vimu5g01522 330 FunFam D6-type cyclin 50 162 - -
Vimu5g01522 330 Gene3D - 43 257 - -
Vimu5g01522 330 Pfam Cyclin, N-terminal domain 41 165 IPR006671 -
Vimu5g01522 330 CDD CYCLIN_AtCycD-like_rpt2 168 259 - -
Vimu5g01522 330 Gene3D - 50 166 - -
Vimu5g01522 330 MobiDBLite consensus disorder prediction 297 330 - -
Vimu5g01522 330 SMART Cyclin_C_2 168 281 IPR004367 -
Vimu5g01522 330 Pfam Cyclin, C-terminal domain 168 267 IPR004367 -
Vimu5g01522 330 SMART cyclin_7 68 159 IPR013763 -
Vimu5g01522 330 SUPERFAMILY Cyclin-like 149 264 IPR036915 -
Vimu5g01522 330 FunFam D6-type cyclin 163 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01522 Vimu-Chr5 26472203 26475112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01522 21 315 Core Cell Cycle Gene Families AT4G03270 41.987 9.52e-68 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01522 K18812 - gmx:100820404 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01522 5 26472203 26475112 Vimu5g01522 5 26472203 26475112 ECH
Vimu4g00970 4 8153168 8154858 Vimu5g01522 5 26472203 26475112 PCT