Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01521 ATGTCATTGCTATGGCTTGTGATTCGTCAACTTACACAAATGGAGGCAATGGCTGCAGAGAAGAAAGTCATAACCAAAGAAGAATGGGAGAAAAGGCTTAATGATGTGAAGATTAAAGGAAGCATGAATAAATTGGTAATAATTTCCGAAGCTAGATATAGGAGAAAAAGGAGAGGTCAAAAGTGTCATTTTATCAAGCCTGTGAGGTGGAGGAAGAGAAATGGGGAGTGTAGGAAGAAATGCCAAGTTAGTAATATTAGAGGCCTCGCTCAGACTGGAGCTTGGCACATAGTTGCGGTGCGGTGGTGTGATATGGTGTTGTGGTTGTTGTTGTTGTTGTTCGTGATGCGGTGGTGTTTCACAGGTACGTGGAGATCTTCGTTCAGGAAGACGATAACCGCTACGCCAGAACGGATATCTCATATCTATTTAGACGCATATCCATCAACGGATACGGTCGTGTGTTTTCCGGTTATGGAAGGAGTTATTGAGCTAAGTACCATTGAACATGTCTTAGAAGATTTCAGTCTAATTGAGCATATCAAGACTTCTTTCTTGAATAATTTTCATGTCAACGATCCAATTAAGTCAGGAACTACATTGAAATCAAGAAACCAGGAAGATCTTGCTTATGTAGCATTTGATAATAATGTTGAATCAATTCCAAAAATTGGGTGCAAAACCTCTCCTGATGGTAGTTCAAATGCATTCCAAGCCAATCAACAATTGGATGAAACTTTCATGGTTGAAAGGATAACCAGTGGCACTTCTCAAGTCCAAAGCTAA 786 0.4008 MSLLWLVIRQLTQMEAMAAEKKVITKEEWEKRLNDVKIKGSMNKLVIISEARYRRKRRGQKCHFIKPVRWRKRNGECRKKCQVSNIRGLAQTGAWHIVAVRWCDMVLWLLLLLFVMRWCFTGTWRSSFRKTITATPERISHIYLDAYPSTDTVVCFPVMEGVIELSTIEHVLEDFSLIEHIKTSFLNNFHVNDPIKSGTTLKSRNQEDLAYVAFDNNVESIPKIGCKTSPDGSSNAFQANQQLDETFMVERITSGTSQVQS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01521 261 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 149 185 IPR025610 -
Vimu5g01521 261 PANTHER TRANSCRIPTION FACTOR TT8 150 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01521 Vimu-Chr5 26437279 26439019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01521 133 261 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 35.862 3.22e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01521 - - gmx:100808167 152.14