Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01517 ATGGGAAGAGCTCCTTGCTGTGACAAGAATGGACTCAAGAAGGGTCCATGGACACCAGAAGAAGACCTTAAACTCATCAACTACATTCAGACTCATGGACCAGGCAATTGGAGATCCCTACCTAAAAGTGCTGGTCTACAAAGGTGTGGCAAGAGTTGCCGCCTTCGATGGACAAATTACCTTAGACCTGATATTAAGAGAGGAAGATTCTCCTTAGAAGAAGAAGATACGATTATTCAGTTGCACAGTATCATGGGAAACAAATGGTCATCTATAGCAGCTAGGTTGCCAGGAAGAACTGACAATGAAATAAAGAACTATTGGAACACACACATTAGGAAGAGGCTTCTTCGTATGGGAATTGATCCAGTCACACACGCCCCACGCCTTGACCTGCTTGACATGTCATCTATTTTAAGGTCAGTGTTGAATCCCTCCCTTAACATGCAAGGCTTCTTAGGAGGAGCTCAAGTTTTGATGAACCAAGGGTTGTTAAACCTTGCTGCTACAGCCTCTTTTCTAGAGAATCAAAATTTGGCTTCACACAATTATGTACAAAACCAAATTGCTCAACCACTAGACATAACTCAGCTTCAAAGTGTGGAAGGATTCTCTGGCACCATGGAAAATTTTAGCGGCTCAAATTCTCCTTTGGGTGATGAGAACCTTGTTTTGCAACAAAACCAAGTTGATTTGTTAGGTAACCATGTTTTTGCGCATTCCCTGAAAAATGCAGAGCTGAAAAAGGGGTATGACTCGGCTATGCCTACGCCTGAGTCAAGTCCAAACCAGTTGAATTCATCATCCAACTATTTGAGAAGTGGCACGGAGGAAGAGAAGAATAGTTTTTGCAGTGACTTGTTCGAATTCGATATTCCAGAGGGTTTAGACATTGCTGATATTTTTTGTACTGTTCCAGAATGTTAA 927 0.4207 MGRAPCCDKNGLKKGPWTPEEDLKLINYIQTHGPGNWRSLPKSAGLQRCGKSCRLRWTNYLRPDIKRGRFSLEEEDTIIQLHSIMGNKWSSIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDLLDMSSILRSVLNPSLNMQGFLGGAQVLMNQGLLNLAATASFLENQNLASHNYVQNQIAQPLDITQLQSVEGFSGTMENFSGSNSPLGDENLVLQQNQVDLLGNHVFAHSLKNAELKKGYDSAMPTPESSPNQLNSSSNYLRSGTEEEKNSFCSDLFEFDIPEGLDIADIFCTVPEC 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01517 308 CDD SANT 69 112 IPR001005 -
Vimu5g01517 308 Gene3D - 13 66 - -
Vimu5g01517 308 CDD SANT 16 61 IPR001005 -
Vimu5g01517 308 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu5g01517 308 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu5g01517 308 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vimu5g01517 308 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu5g01517 308 Gene3D - 69 116 - -
Vimu5g01517 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu5g01517 308 MobiDBLite consensus disorder prediction 256 272 - -
Vimu5g01517 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vimu5g01517 308 FunFam MYB-related transcription factor 13 66 - -
Vimu5g01517 308 SMART sant 66 114 IPR001005 -
Vimu5g01517 308 SMART sant 13 63 IPR001005 -
Vimu5g01517 308 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vimu5g01517 308 MobiDBLite consensus disorder prediction 251 272 - -
Vimu5g01517 308 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 252 - -
Vimu5g01517 308 FunFam Transcription factor MYB39 69 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01517 Vimu-Chr5 26389905 26391250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01517 1 298 MYB Transcription Factor Family AT4G21440 48.127 4.86e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu5g01517 Myb_DNA-binding 2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01517 K09422 - gmx:100817731 465.307