Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01492 ATGGATGCGGTGTGGACTTTTTTGGTAGGTTTGATTTTTGGATTTGTTGAAGTGCTGATAATAGCTTCAAGGGAGTTGACCGGGATTGTGCTGAAGATTAAGGGTGTGGTGAAGATCAATGGATTGGAAGAGATCTGCTTCGGAGTGCCAGAGAGTAAAGATCTGTGGACAAGTTCTGTTGGGATTTTTATTCGGTGGTCACACTGGTGTAGTGGACCGTTGATAGTGCAGACTTCTGGGACTTCTTTTGACCTGTCTTCTTCTATGCTATCTGCTGGCGATCAAATTAGATTTCATGTGTTCTTAGATGATGTTTTGGGGTTGATATCCTTCTTCCCCTTTAAAGCTGAAGTTATTACACTTTGTGTTCCCTTGCTGCAATTAATAGCTTATATGTTGCACTGGGATCCCCTGTTCTTCCTGGGTGGGTTGCTAGTGGAGGAGATCCATGTGGAGAAGGGTGGCAAGGCATTCTGTGTAATGGGTAGTGATCTAAGCAACAACAACATTGGAGGAAATATTCCATCTAGTTTGCCAGTTACCATGAAAAACTTTTTTCTTTCAGCCAACCAGTTTACTGGAAGTATTCCAACCACTTTATCCACTCTGGCTGGACTGACAGACATTAGGAATATTGAGAACAACCAGTTTGCTGGCCCAATACCTCCAAAGTTGCTGAGCATCCCAGCCTTCAGGCAAGCTGGAAACCCATTTAATGTTAATGGTACAACACCTCCAGCTTCTTCACCTCGCTCCCCAGCAATAGCACCACCAGGAACTCCCATTTCTGGGGCACCACCGGGAACTCCCACCTCTGGGTCACCACCATCTTCTGGCCGTATACCTACTAAACAGGCCGATGGACCAGCTGCAGCAAATGAATCGCACACTGGGAAATCCAAAAATTCCACAAAAAGGGTGGTTTGGATATCTATTGGTAGTGTGTTAGGATTCATTATTTTGTTACTAGGATTCATTCTCTTTATTCCAAGATGCAGCAGAAGAGAACGGGATGGCAGAAGGTCCAAACATCAAATTGGTGCGTATGGGGCTGAAAGGGAAATGATCAGGGATAACGGGAGTTCAGTCCAACCACCTAGTCAAATGGAAAAAGCAGTACCAGTAGGGGATGTTCCAAGGCCAAAAGAGGACCATCAGGCAGAGAATAGGACAGCCTGGGCTAATCCAAGGCAAAACGAAGGTCGTCAGGCAGAGATCAGGACAGTCTCGGCTATTCCAAATCCACGGAGTAAGCAAGAGAATGATGTGCAAAGAATGGCAACAATACCAAAGCCAAGAGATCATGAGATAGATATTAGTACACTAGAAGTATATTCAATGCCTCCTCCCCCTCCACCCCCACCACCTCCTCCACCCCCACCCCCACCTCCACCTCCACCTACACCTCCTACTATTGAGAAGGTGACTGTTGAGCCAGCCACATCCCGCAGAGCAACTAACGTCACTACACACAAAAAGAGTGCAGTTCCTCCTACTTTTGCGAAGTTTTTTGGTATTGCATCCCTTCAACAGTATACAAATAGCTTTTCTCAAGAAAATCTTATAGGAGGAGGCATGCTTGGTAATGTGTATAGAGCCGAGCTTCCTAATGGCAAGTTTCTTGCTGTAAAGAAACTGGACAAGAGAGCTTCGGAAAACCAGAAGGATGATGAATTTCTTGAATTGATCAATAGTATTGACAGAATAAGGCATGCAAATGTTGTTGAGCTCGTCGGATACTGTTCCGAGCATGGTCAGAGGCTTCTTATATTTGAGTACTGCAGTAATGGGTCACTGTATGATGCACTCCACTCAGACGATGACTTCAAAACCACACTCTCATGGAATACTAGAATTCGAATAGCTCTTGGGGCAGCCAGAGCCTTAGAATATCTGCATGAGCTATGTCAGCCACCTGTAGTACATAGAAATTTGAAGTCTGCCAATATTCTGCTTGATGATGATCTATCCGTGCGGGTCTCTGATTGTGGTTTAGCTCCATTAATAGCTTCAGGATCAGTCAGTCAGCTCTCGGGGAACCTGTTAACTGCTTATGGCTATGGAGCTCCTGAATTTGAGTCTGGAATATACACATACCAAAGTGACGTGTACAGCTTTGGAGTGATCATGTTAGAACTTTTGACTGGCCGCCAGTCCCACGACAGGACACGTCCCCGGGGTGAGCAGTTTCTGGCCAGATGGGCAGTTCCCCAACTTCATGATATTGAAGCCTTATCAAACATGGTTGACCCTGCTTTGAATGGAAATTACCCAGCAAAATCATTGTCAAATTTTGCAGACATTATCTCTAGATGCCTTCAGTCCGAGCCAGAATTTAGGCCAGCAATGTCCGAGGTTGTCTTATACTTACTAAATATGATAAAGAAGGAGTCTCAGCTAGGTGAATCAAATGAAAAATGA 2421 0.4494 MDAVWTFLVGLIFGFVEVLIIASRELTGIVLKIKGVVKINGLEEICFGVPESKDLWTSSVGIFIRWSHWCSGPLIVQTSGTSFDLSSSMLSAGDQIRFHVFLDDVLGLISFFPFKAEVITLCVPLLQLIAYMLHWDPLFFLGGLLVEEIHVEKGGKAFCVMGSDLSNNNIGGNIPSSLPVTMKNFFLSANQFTGSIPTTLSTLAGLTDIRNIENNQFAGPIPPKLLSIPAFRQAGNPFNVNGTTPPASSPRSPAIAPPGTPISGAPPGTPTSGSPPSSGRIPTKQADGPAAANESHTGKSKNSTKRVVWISIGSVLGFIILLLGFILFIPRCSRRERDGRRSKHQIGAYGAEREMIRDNGSSVQPPSQMEKAVPVGDVPRPKEDHQAENRTAWANPRQNEGRQAEIRTVSAIPNPRSKQENDVQRMATIPKPRDHEIDISTLEVYSMPPPPPPPPPPPPPPPPPPPPTPPTIEKVTVEPATSRRATNVTTHKKSAVPPTFAKFFGIASLQQYTNSFSQENLIGGGMLGNVYRAELPNGKFLAVKKLDKRASENQKDDEFLELINSIDRIRHANVVELVGYCSEHGQRLLIFEYCSNGSLYDALHSDDDFKTTLSWNTRIRIALGAARALEYLHELCQPPVVHRNLKSANILLDDDLSVRVSDCGLAPLIASGSVSQLSGNLLTAYGYGAPEFESGIYTYQSDVYSFGVIMLELLTGRQSHDRTRPRGEQFLARWAVPQLHDIEALSNMVDPALNGNYPAKSLSNFADIISRCLQSEPEFRPAMSEVVLYLLNMIKKESQLGESNEK 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01492 806 Gene3D Phosphorylase Kinase; domain 1 475 593 - -
Vimu5g01492 806 Gene3D Ribonuclease Inhibitor 146 236 IPR032675 -
Vimu5g01492 806 SUPERFAMILY Formin homology 2 domain (FH2 domain) 457 467 - -
Vimu5g01492 806 MobiDBLite consensus disorder prediction 376 390 - -
Vimu5g01492 806 ProSiteProfiles Protein kinase domain profile. 516 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01492 806 Gene3D Transferase(Phosphotransferase) domain 1 594 806 - -
Vimu5g01492 806 PANTHER OS01G0253100 PROTEIN 494 796 - -
Vimu5g01492 806 MobiDBLite consensus disorder prediction 358 472 - -
Vimu5g01492 806 Pfam Protein tyrosine and serine/threonine kinase 519 788 IPR001245 GO:0004672|GO:0006468
Vimu5g01492 806 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 594 804 - -
Vimu5g01492 806 MobiDBLite consensus disorder prediction 445 472 - -
Vimu5g01492 806 MobiDBLite consensus disorder prediction 391 424 - -
Vimu5g01492 806 SUPERFAMILY Protein kinase-like (PK-like) 493 790 IPR011009 -
Vimu5g01492 806 MobiDBLite consensus disorder prediction 250 273 - -
Vimu5g01492 806 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 481 593 - -
Vimu5g01492 806 MobiDBLite consensus disorder prediction 237 304 - -
Vimu5g01492 806 SUPERFAMILY L domain-like 164 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01492 Vimu-Chr5 26097173 26103329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01492 155 797 Strubbelig Receptor Gene Family AT4G03390 51.032 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vimu5g01492 PK_Tyr_Ser-Thr 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01492 - - mtr:25492087 757.288