Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01482 ATGGGTTGTTGTGTCTCGACAAGCAGTAGAAGTACTTGTAGCAGCAAGAGCAATGGAGACACGGTCTCTCCATCTTGTTTAGAAATTGGATTCTGTGGGCAGAAGAGAACAAGACGAACATTCTCTGATCATGTTATTTCTCTTCACCATTTACCATCCTTACCTAGCAGAATTTTCTCTAATGGAAAGAGCCGGGGTTCGTGCATCTTTACGCAGCAGGGCCGCAAGGGTATTAATCAGGATGCCATGATTGTGTGGGAAGATTTCATGTCTGAAGATATGATCTTTTGTGGTGTTTTTGATGGGCATGGTCCGCACGGTCATCTTGTTGCACGCAAAGTTAGGGATGCTCTACCTCTTAAACTGCTATCATTTTTGCATTCTTCTGAATCAAAGCGAAATGGGTCTGGTAAAACTTGCTTCAAAGGGAATGTAAAATCTGATAGTGTAGAATTTGAGAAGGATTGCTCCACAGAGGATAAAATGAACTCTATGTGGAGAGAAGCTTTCATGAAGGCATACAAGGCTATGGATAAGGAGCTCAGGTCCCATCCGAATTTGGATTGCTTCTGCAGTGGGAGCACTGCTGTGACTATAGTGAAGCAGGTAGTAGAAGAGCACCATTTTACTGTTATGATTGGTTCCAATCTGTTCATGGGCTATATTGGGGATTCTCGGGCAATCATGGGATCAAAGGATAGCAATGATTCATTGGTGGCTATTCAGTTGACTGTGGATTTGAAGCCTGATTTGCCAAGGGAAGCAGAAAGAATTAAGCGCTGCAAAGGTAGGGTATTTGCTTTGCAAGATGAGCCTGAAGTGCCTAGGGTGTGGTTGCCCTTTGATGATGCACCAGGATTAGCAATGGCCAGAGCCTTTGGAGATTTCTGCTTGAAGGAGTATGGTGTGATTTCTATCCCCGAGTTTTCCCATCGGCAGCTTACTGACAGAGATCAATTCATTGTTCTTGCATCAGACGGGGTGTGGGATGTTTTAAGCAATGAGGAGGTGGTTGAAATAGTATCTTCAGCACCAACAAGATCATCAGCAGCAAGGATTCTGGTAGATTCTGCTGCAAGGGAGTGGAAACTGAAATACCCTACTTCAAAGATGGATGACTGTGCTGTAGTATGCTTATTTTTGGATGGGAAAATGGACTCAGAATCTGATTATGATGAACAAGGCTTTTCGTCTGCAACCATACAGAGCAACCATTCAGGTAACCCCATTGAGTCAGATGATGGACAAAAGTCTGAGCCATCATTGCAGAGGAACTTCACTGTGAGATCCTCAGAAGAAAATGAGACTAATGGAGCACTAACTGTTGATGTCGAAGATGGAACATCATCAGCTGATGATCAAAACTGGTCAGGTTTGGAAGGGGTCACTCGTGTAAACTCACTTGTCCAACTTCCTAGATTTTCTGAGGAAAGGCCAAACTCTTGA 1446 0.4371 MGCCVSTSSRSTCSSKSNGDTVSPSCLEIGFCGQKRTRRTFSDHVISLHHLPSLPSRIFSNGKSRGSCIFTQQGRKGINQDAMIVWEDFMSEDMIFCGVFDGHGPHGHLVARKVRDALPLKLLSFLHSSESKRNGSGKTCFKGNVKSDSVEFEKDCSTEDKMNSMWREAFMKAYKAMDKELRSHPNLDCFCSGSTAVTIVKQVVEEHHFTVMIGSNLFMGYIGDSRAIMGSKDSNDSLVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRQLTDRDQFIVLASDGVWDVLSNEEVVEIVSSAPTRSSAARILVDSAAREWKLKYPTSKMDDCAVVCLFLDGKMDSESDYDEQGFSSATIQSNHSGNPIESDDGQKSEPSLQRNFTVRSSEENETNGALTVDVEDGTSSADDQNWSGLEGVTRVNSLVQLPRFSEERPNS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01482 481 MobiDBLite consensus disorder prediction 1 21 - -
Vimu5g01482 481 MobiDBLite consensus disorder prediction 392 458 - -
Vimu5g01482 481 MobiDBLite consensus disorder prediction 391 458 - -
Vimu5g01482 481 PANTHER PROTEIN PHOSPHATASE 65 379 IPR015655 GO:0004722|GO:0006470
Vimu5g01482 481 CDD PP2Cc 65 381 IPR001932 -
Vimu5g01482 481 Pfam Protein phosphatase 2C 98 358 IPR001932 -
Vimu5g01482 481 SUPERFAMILY PP2C-like 57 383 IPR036457 -
Vimu5g01482 481 SMART PP2C_4 50 379 IPR001932 -
Vimu5g01482 481 ProSiteProfiles PPM-type phosphatase domain profile. 66 381 IPR001932 -
Vimu5g01482 481 Gene3D - 59 383 IPR036457 -
Vimu5g01482 481 FunFam probable protein phosphatase 2C 52 57 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01482 Vimu-Chr5 25900491 25903445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01482 1 481 PP2C-type Phosphatase Gene Family AT1G03590 68.916 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01482 - - gmx:100813306 888.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01482 5 25900491 25903445 Vimu5g01482 5 25900491 25903445 ECH
Vimu4g01020 4 8599081 8601453 Vimu5g01482 5 25900491 25903445 PCT