Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01477 ATCATTGGATGGATATTTTATGATCTTGTAAATTGGTTTCAGCTGGTCAGCATGGTACTGAGCTGTGGAATGCAGGCCCTTATCTCGAATGACACCTTTCTAGTCCAGGCTGTTTCTATGGCCTTCCAAGATCTTAATGGATTTTCTTTCAAAGGAAGGAATGGTCTGGGCCTTGATGGTATGCACTGGGCTTTGGCTGGTCCAGTCCAGATTTCATATTCCTTTGATACAACTTGCAAGAGAGAAGATCTTAAATTGGAGTTGCATTGCTCTTTTGCTAAGAAAAATGATGAAAATTACAGATTGAACTGGAGTGGATACATAGGGTTAGCTCTTACTGGTTTTGATATGTGCTATGATCTTAAGGCCCAGTTAGTAATGGGCCGTATGTATGCCCTTGGAAATGTTAATGGATTTTGTATCAACAGAAGAAATGGGCCGGGACAAACTGGAATGGACCAGGCCTTGGAGGATCCAATCTATCAACTGAGTTTAGATTTTTACATTATAACATATGTGTGGTATATTTGTAATCAGGGTTTGAGCAGTGAGGAGGAAGAGTCACTTCTAGGGCAAGTTGAAATATGGAGGTACATGACAAGCTTCACTGATTCCATGGCCCTAAAATCTGTGGTAGAGCTTCGCATAGCAGATATAATAGACAGCTATGGCAAGCCACTATCCTTGTCTCAAATTGTGGAGAACATTGAGAATGCACCTTCCCCAGATGTGAGTCTTCTGGAGAGAGTGATGAGAGTGATGGTGCGCAGAAAAATCTTTAGTGCAGAGAAATCAGAGACTGGAGAGACCCTTTACGGCTTGACGCGTGCTTCCAAATGGATCCTACGAGACACAAAAATCACCTTAGCACCATTCTTGCTGTTGGAGAACCACCCAATTCATCTCAACCCTGCTCACTACATCAGTGAGATTGTCAGAGAAGGCACCAAAAACGGCACTGCTTTCTTCAGGTGCCATGGGCATGAGCAATTTGAGATGACAGGGTTGGACTCTGACTACAACAGATTGTTCAATGAGGGGATGGTGTGCACCACTAAGTTTGTCACCAAGGCTGTCATCAATGGCTACAGAGATGGGTTTAACAAGATTGAGTCTTTGGTTGACGTGGGAGGTGGCATTGGAGGCTCTCTTTCTGAGATTGTCAGGGCTTACCCTCACATCAAAGGCATCAACTTTGACTTGCCTCATGTGGTTTCCACTGCACCTAACTTTGATGGAATCACTCATGTTGGAGGTGACATGTTCGTCTCCATTCCCTCTGCTGATGCCATTTACATGAAGTGGATTTTGCATGACTGGAGCGACGAGCACTGCGTGAAGATCCTGAAGAACTGCAGGAAAGCTATACCAGAGAAGACAGGAAAGGTGATAATTGTGGATCATGTGCTTCGACCCGAAGGGAACGAACCCTTCACTGATGTTGGCATTGCGTTTGACATGTTGCTTCTCGCTCACAACGCTGGTGGCAAAGAGAGGACCGAAGAGAATTGGAAGTGGCTATTCAAAGAAACAGGATTCGCTCGTTACAACATCATCAAGATCAACGCTCTCCCCTCCATCATTGAGGCGTATCCAATTTGA 1602 0.4457 IIGWIFYDLVNWFQLVSMVLSCGMQALISNDTFLVQAVSMAFQDLNGFSFKGRNGLGLDGMHWALAGPVQISYSFDTTCKREDLKLELHCSFAKKNDENYRLNWSGYIGLALTGFDMCYDLKAQLVMGRMYALGNVNGFCINRRNGPGQTGMDQALEDPIYQLSLDFYIITYVWYICNQGLSSEEEESLLGQVEIWRYMTSFTDSMALKSVVELRIADIIDSYGKPLSLSQIVENIENAPSPDVSLLERVMRVMVRRKIFSAEKSETGETLYGLTRASKWILRDTKITLAPFLLLENHPIHLNPAHYISEIVREGTKNGTAFFRCHGHEQFEMTGLDSDYNRLFNEGMVCTTKFVTKAVINGYRDGFNKIESLVDVGGGIGGSLSEIVRAYPHIKGINFDLPHVVSTAPNFDGITHVGGDMFVSIPSADAIYMKWILHDWSDEHCVKILKNCRKAIPEKTGKVIIVDHVLRPEGNEPFTDVGIAFDMLLLAHNAGGKERTEENWKWLFKETGFARYNIIKINALPSIIEAYPI 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01477 533 FunFam O-methyltransferase family protein 283 531 - -
Vimu5g01477 533 CDD AdoMet_MTases 373 470 - -
Vimu5g01477 533 Pfam Dimerisation domain 206 255 IPR012967 GO:0046983
Vimu5g01477 533 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 287 531 IPR029063 -
Vimu5g01477 533 Gene3D - 178 281 IPR036388 -
Vimu5g01477 533 Gene3D Vaccinia Virus protein VP39 283 533 IPR029063 -
Vimu5g01477 533 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 196 532 IPR016461 GO:0008168
Vimu5g01477 533 Pfam O-methyltransferase domain 307 513 IPR001077 GO:0008171
Vimu5g01477 533 SUPERFAMILY "Winged helix" DNA-binding domain 186 284 IPR036390 -
Vimu5g01477 533 PANTHER O-METHYLTRANSFERASE 195 515 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01477 Vimu-Chr5 25755095 25763341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01477 206 519 Monolignol Biosynthesis Gene Families AT5G54160 38.438 3.58e-75 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01477 K22588 - gmx:100800801 658.292