Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01474 ATGAAAATAGTGAAGAGGTGTAGGAGCACTTGGGGTGGTGGAGGGAGCAATACCCCTATAGTTGAAATACAGCATGCGTGCGTGATTGCGAGCGTGCGTGCTAACGAGCGTGCCGGGCGACCATCCATGCGTGCCTCTGTGCATGCGTGCTGGCGAGCGTGTGTGCAGGCGTGCGAGCGGGCGTGCATGCGTGCTAGCGGACTTGCTGCATCTCTCCGACCTTCTCTTATTACTCTGGAAAGAAAGGTTGCTACTGTGTTCATTGGAACCTTTATTATCATATTCGCTGCCACTGCTGCAGCCATTGTCAACCAGAACTCTGAGACCCTTAAGACCCGTAATTGTGCTACAACCCCAAGTCTTACTGTTATGGTTGTCATATTTGCCACCGGACATAAATCAAGAGCCCATATCAACCCTGGGTCTATTTATATTGGTGTACAAGTTTTGGCATCGGTTTGTACCGCATTTGCTTTGAAAGGGGTTTATCATCCTTCCATGAATGGTGGAGTTACAGTTCCTTCAGCCATCGACACCATAAGCGGGTGCATGCGCGCGCGCGCGCGTGTTCCCGCCAAACCTACGATTCCTTCTCTTGTTACTCTGGAAAGAAAGGTTGCTACTGTGTTCATTGGAACCTTTATTATCATATTCGCTGCCACTGCTGCATCCATTTTCAACCACAACTCTGAGACCCTTAAGACCCGTAATTGGCTACAACCGCAGGAGTATATTTATATTGGTGTACAAGTTTTGGCATCGGTTTGTACCGCATTTGCTCTGAAAGGGGTTTATCATCCTTCCATGAATGGTGGAGTTACAGTTCCTTCAGGTGGATATGGTTAA 846 0.4846 MKIVKRCRSTWGGGGSNTPIVEIQHACVIASVRANERAGRPSMRASVHACWRACVQACERACMRASGLAASLRPSLITLERKVATVFIGTFIIIFAATAAAIVNQNSETLKTRNCATTPSLTVMVVIFATGHKSRAHINPGSIYIGVQVLASVCTAFALKGVYHPSMNGGVTVPSAIDTISGCMRARARVPAKPTIPSLVTLERKVATVFIGTFIIIFAATAASIFNHNSETLKTRNWLQPQEYIYIGVQVLASVCTAFALKGVYHPSMNGGVTVPSGGYG 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01474 281 Gene3D Glycerol uptake facilitator protein. 75 241 IPR023271 -
Vimu5g01474 281 PRINTS Major intrinsic protein family signature 208 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01474 281 PRINTS Major intrinsic protein family signature 81 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01474 281 PRINTS Major intrinsic protein family signature 119 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01474 281 SUPERFAMILY Aquaporin-like 81 224 IPR023271 -
Vimu5g01474 281 PANTHER AQUAPORIN NIP2-1 63 178 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01474 Vimu-Chr5 25713333 25715865 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01474 197 279 Major Intrinsic Protein MIP AT1G80760 33.058 5.30e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01474 K09874 - gmx:100815637 97.0561