Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01473 ATGGAAAATGAGAGTGAGGAAGTGTGCCTTGGAAGGTGGCTAGAGGGAGTCTTTGGACTCTCTAGCCTTTGTAATTCTTTTTCTTCTCACTCACCACAAAACCATTTGATCTCTCACTTGCATGCGTGCGTACGGGCGGGCGTACATGCGTACATACGTGCGAGCGTGCGTGCTGGCGAGCAGCCTTCTCTTGTTACTCTGGAAAGAAAGGTTGCTACTGTGTTCATTGGAACCTTTATTATCATATTCGTTATCACTGCTGCAGCCATTTTCAACCACAACTCGGAGACCCTTAAGACCCGTAATTGTGCTACAACCGCAGGTCTTACTGTTATGGTTGTCATATTTGCCACCGGACATATTTCAGGAGCCCATATCAACCCAGCTGTTACTTTTTTGTTTGTTGTGTTGAAGCACTTCCCATGGAAACATGTGTCTATTTATATTGGTGTACAAGTTTTGGCATCGGTTTGTGCCGCATTTGCTCTGAAAGGGGTTTATCATCCTTTCATGAATGGTGGAGTTATAGTTCCTTCAGGAATTGCAGTGGAAGGCACTCTGATGCTCAATATACTCATAGCAAGGTATATCACTGTTTATGTTTCTGAAAGTGATGGCCAGTATCAGGGGCTCAATGAACCCACTGAGAACACTAGGTCCTGCCATCGCCACAAATAA 678 0.4484 MENESEEVCLGRWLEGVFGLSSLCNSFSSHSPQNHLISHLHACVRAGVHAYIRASVRAGEQPSLVTLERKVATVFIGTFIIIFVITAAAIFNHNSETLKTRNCATTAGLTVMVVIFATGHISGAHINPAVTFLFVVLKHFPWKHVSIYIGVQVLASVCAAFALKGVYHPFMNGGVIVPSGIAVEGTLMLNILIARYITVYVSESDGQYQGLNEPTENTRSCHRHK 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01473 225 Pfam Major intrinsic protein 66 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01473 225 SUPERFAMILY Aquaporin-like 67 174 IPR023271 -
Vimu5g01473 225 PRINTS Major intrinsic protein family signature 107 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01473 225 PRINTS Major intrinsic protein family signature 69 88 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01473 225 PRINTS Major intrinsic protein family signature 144 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01473 225 PANTHER AQUAPORIN NIP2-1 60 198 IPR034294 -
Vimu5g01473 225 Gene3D Glycerol uptake facilitator protein. 50 203 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01473 Vimu-Chr5 25710302 25712296 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01473 61 194 Major Intrinsic Protein MIP AT1G80760 48.824 3.33e-44 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01473 K09874 - gmx:100815637 148.673