Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01470 CAGCTCCAGCAGCAGCAACAACAACAGCAGTATCAGCAGCAGCAGCAGCTTCTTCAGTATTGGAATGACGCACTCAATTTGAGTCCAAGAGGGAGGATGATGATGATGATGATGAACCGGTCAGGGCATGAAGGGAGACCAATGTTAAGGCCTCAAGCACAGCCTTTGAATGCCACCAAGCTCTATAGGGGAGTGAGGCAACGCCATTGGGGCAAATGGGTCGCCGAAATTCGTCTCCCTCGCAATAGAACTCGCCTCTGGCTTGGAACCTTCGACACTGCCGAAGATGCTGCCATGGCTTATGATCGTGAAGCCTTTAAGCTTAGAGGAGAAAATGCTAAGCTCAATTTCCCTGAACTCTTCCTTAACAAAGATAAAGCAGAACCATCCACACCTGCTCCTGCTTCTTCCTCCAACGAAGGCTCAACATCAACATCAAGCCAGAACACTAAGCAACCTGAGCCAGTTCCAGAAGAGACCAACACAGAGAGCGAGGACATGCCACCAACTGAGACATTAGCAGAAGAGAATGCTGAAACTGAGGAAGGAGTTTCACAGCCTCAGGAACTGGTTTGGGGAGAGTGGTTCAATACAATTCCTGCAGGTTGGGGTCCTGGGAGTCCCGTATGGGATGATTTGGATCACAACAACAATCTTCTTCTGCATTCACAACTTCCCTTTGTGAATCAATCTCATCAAGAGTTCCATCATGATGCCGCCGGTGATTCTTCTCAGACACAACAAGATAACAACAACGCAGGACCAGGTTCTTCCTCTCCCTCTTGTCCCATGAGGCCCTTCTTCTGA 807 0.4907 QLQQQQQQQQYQQQQQLLQYWNDALNLSPRGRMMMMMMNRSGHEGRPMLRPQAQPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENAKLNFPELFLNKDKAEPSTPAPASSSNEGSTSTSSQNTKQPEPVPEETNTESEDMPPTETLAEENAETEEGVSQPQELVWGEWFNTIPAGWGPGSPVWDDLDHNNNLLLHSQLPFVNQSHQEFHHDAAGDSSQTQQDNNNAGPGSSSPSCPMRPFF 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01470 268 MobiDBLite consensus disorder prediction 130 157 - -
Vimu5g01470 268 SUPERFAMILY DNA-binding domain 61 119 IPR016177 GO:0003677
Vimu5g01470 268 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 3 213 - -
Vimu5g01470 268 CDD AP2 60 120 IPR001471 GO:0003700|GO:0006355
Vimu5g01470 268 Pfam AP2 domain 62 110 IPR001471 GO:0003700|GO:0006355
Vimu5g01470 268 ProSiteProfiles AP2/ERF domain profile. 61 118 IPR001471 GO:0003700|GO:0006355
Vimu5g01470 268 FunFam Ethylene-responsive transcription factor 2 60 119 - -
Vimu5g01470 268 MobiDBLite consensus disorder prediction 240 259 - -
Vimu5g01470 268 Gene3D AP2/ERF domain 61 119 IPR036955 GO:0003700|GO:0006355
Vimu5g01470 268 MobiDBLite consensus disorder prediction 232 268 - -
Vimu5g01470 268 MobiDBLite consensus disorder prediction 125 187 - -
Vimu5g01470 268 MobiDBLite consensus disorder prediction 159 178 - -
Vimu5g01470 268 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Vimu5g01470 268 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Vimu5g01470 268 SMART rav1_2 61 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01470 Vimu-Chr5 25657610 25659222 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01470 21 219 AP2-EREBP Transcription Factor Family AT2G20880 56.585 2.26e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu5g01470 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01470 - - var:108339749 468.388