Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01461 ATGGCCGTGTCATTGTTCAGAAGTCGCACTGCTTCATCACTCAATTTGTTTGCTAATACTCTTCGCCGATTCTCTACTGGGGTGACAAACACTAGTGCTCAAAGAACGCCAGAGAGTATAGTGAATCAAATGATGTATTCTGACATAAACTCACGAATTGGGAGTTGCATGCCACTGTCTGCAATGCGAATTGGAACAATCATTCACAACATTGAATTGAACCCAGGGCAAGGTGGCAAGCTTGTCCGAGCTGCAGGAACTAGTGCAAAGATCTTGAAAGAGCCCACATCAGCATATTGTTTAATCCAGCTGCCCTCTGGTGTTAAAAAGTTAATTGATTCTCGATGTAGGGCCACCATTGGTGTTGTGTCTAATCCAAGCCATGGGGATCGCAAGCTTAGGAAGGCCGGACACAGACGATGGCTTGGTCGAAGACCTGTTGTTCGAGGAGTGGCTATGAATCCCGTAGATCATCCTCATGGGGGAGGAGAGGGTAAAAGCAAGAGTGGTGGAAAATGGGGAAGAGGATCTCTCACTCCTTGGGGCAAGCCTACCAAGGGTGGCTATAAGACTCGACCCCTGAAGCGCGCAGAAGTTAGTAATAGTATATATAGCATTCACTATAGCTGCTTCTGA 636 0.4686 MAVSLFRSRTASSLNLFANTLRRFSTGVTNTSAQRTPESIVNQMMYSDINSRIGSCMPLSAMRIGTIIHNIELNPGQGGKLVRAAGTSAKILKEPTSAYCLIQLPSGVKKLIDSRCRATIGVVSNPSHGDRKLRKAGHRRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSGGKWGRGSLTPWGKPTKGGYKTRPLKRAEVSNSIYSIHYSCF 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01461 211 SMART Ribosomal_L2_C_2 51 184 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vimu5g01461 211 SUPERFAMILY Translation proteins SH3-like domain 53 196 IPR008991 -
Vimu5g01461 211 Gene3D - 47 123 IPR014722 -
Vimu5g01461 211 Pfam Ribosomal Proteins L2, C-terminal domain 53 181 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vimu5g01461 211 NCBIfam 50S ribosomal protein L2 47 196 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Vimu5g01461 211 MobiDBLite consensus disorder prediction 152 189 - -
Vimu5g01461 211 Gene3D Ribosomal protein L2, domain 3 124 205 IPR014726 -
Vimu5g01461 211 ProSitePatterns Ribosomal protein L2 signature. 146 157 IPR022671 GO:0003735|GO:0005840|GO:0006412
Vimu5g01461 211 FunFam 50S ribosomal protein L2 124 205 - -
Vimu5g01461 211 FunFam 60S ribosomal protein L2, mitochondrial 47 123 - -
Vimu5g01461 211 PANTHER RIBOSOMAL PROTEIN L2 32 196 IPR002171 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01461 Vimu-Chr5 25594073 25595238 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01461 43 163 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 42.636 1.58e-23 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01461 - - gmx:100792418 327.791