Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01453 ATGCAGCTCCACCGTGCCTCCACCCCGGCAAAAGGCCTTGCCTGCTTCATTGTCGCCTTGAAACTCGTGCTGTTGTACGCCGCCGAGGGACAGCCTCAGCACCGCGGTCCCGACCTACATTGGTACTCCGGAACCGCCACCTGGTACGGCGACCCCGAAGGAGACGGCAGCACCGGTGGGGCATGTGGGTATGGTTCGATGGTGGATGTGAAGCCGTTCAGGGCTCGAGTGGGAGCAGTGGGGCCCTTGCTGTTCATGAACGGCGAAGGGTGCGGTGCCTGCTACAAGGTGAGGTGTTTGGACAAGAGCATATGTTCGAGACGAGCTGTGACAGTCATAATTACCGACGAGTGCCCAGGTTGCCCCTCTGACCAAACACACTTCGATCTCAGTGGTGCCGCCTTTGGTCGCATGGCCATTGCTGGCGAGAACGGTCCTCTCAGAGACCGTGGTCAAATCCCTGTCATTTACCGAAGAACACCGTGTAAATATCCCGGTAGAAAAATTGCTTTTCATGTCAACGAAGGCTCCACACCATTTTGGCTATCACTTCTGGTTGAGTTTGAGGACGCAGAAGGAGATATTGGCTCCATGCATATACGAGAAAATTTGACAATTCCAAATTTTGGGGACGTGTCTCCTTACCACACGTGCCTCAACACTACCATCTTTTGCACTTTAGGAGTAATAGGATCTACAGAATGGCTGCAGATGAATCACCTCTGGGGTGCAAATTGGTGCATTATTGGGGGACCTTTAAGAGGACCGTTGTCAGTAAAATTGAGCTCTTCCACTGGTAGAAGTCTCTCTGCAAGAGATGTTATTCCGGGAAGTTGGGTTCCAAAGGCGACTTACACTTCTCGGCTAAATTTCTACCCTTAG 882 0.5238 MQLHRASTPAKGLACFIVALKLVLLYAAEGQPQHRGPDLHWYSGTATWYGDPEGDGSTGGACGYGSMVDVKPFRARVGAVGPLLFMNGEGCGACYKVRCLDKSICSRRAVTVIITDECPGCPSDQTHFDLSGAAFGRMAIAGENGPLRDRGQIPVIYRRTPCKYPGRKIAFHVNEGSTPFWLSLLVEFEDAEGDIGSMHIRENLTIPNFGDVSPYHTCLNTTIFCTLGVIGSTEWLQMNHLWGANWCIIGGPLRGPLSVKLSSSTGRSLSARDVIPGSWVPKATYTSRLNFYP 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01453 293 Gene3D - 163 288 IPR036749 -
Vimu5g01453 293 Gene3D - 28 162 IPR036908 -
Vimu5g01453 293 SUPERFAMILY PHL pollen allergen 167 287 IPR036749 -
Vimu5g01453 293 CDD DPBB_EXPB_N 41 162 - -
Vimu5g01453 293 SMART dpbb_1 77 157 IPR007112 -
Vimu5g01453 293 PRINTS Major pollen allergen Lol pI signature 117 132 IPR005795 GO:0005576|GO:0019953
Vimu5g01453 293 PRINTS Major pollen allergen Lol pI signature 139 154 IPR005795 GO:0005576|GO:0019953
Vimu5g01453 293 PRINTS Major pollen allergen Lol pI signature 171 186 IPR005795 GO:0005576|GO:0019953
Vimu5g01453 293 PRINTS Major pollen allergen Lol pI signature 187 202 IPR005795 GO:0005576|GO:0019953
Vimu5g01453 293 Pfam Expansin C-terminal domain 169 276 IPR007117 -
Vimu5g01453 293 SUPERFAMILY Barwin-like endoglucanases 40 166 IPR036908 -
Vimu5g01453 293 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576
Vimu5g01453 293 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Vimu5g01453 293 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Vimu5g01453 293 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576
Vimu5g01453 293 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 167 IPR007112 -
Vimu5g01453 293 FunFam Expansin B3 27 163 - -
Vimu5g01453 293 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 287 IPR007117 -
Vimu5g01453 293 Pfam Lytic transglycolase 82 156 IPR009009 -
Vimu5g01453 293 PANTHER EXPANSIN-B3 19 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01453 Vimu-Chr5 25535917 25538722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01453 13 220 Expansin Gene Family AT4G28250 66.827 1.71e-96 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01453 K20628 - gmx:100804525 506.908