Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01448 ATGAACCAAGAAGGAATTGACTCTTACAACAACCTTATCAATAAGGCGGCTGGGAGTACATATGGGAATCATTTTCTTGTGACTACATACAGAGAATCTCATGGAGGAGGCGTTGGCTGTGTCATAGATGGATGTCCTCCTCGTATACCTCTCTCTGAAGCTGACATGCAAGTGGATCTTGACAGAAGGAGAAGGAAGTGTTGTGTATCTTCGAAGACTGAGTGGAGTTTCACAGCAGCACAGCAGCAGGGCAACTTGACCAACTCCTTCATCAGCTCACAAGAAGCAACATTTGGGCTTCCAGCTCAAAGTCTAGCCAAGCTTCAAGTCACGGCACTTGGCAGGACAACTGCTAAAGCTGGTGTGTCTATGCCTCTATCTGATCAAAAGAACCTTTTCAGTTTTGAGAGCCCAAGATTAAGATTTGCAGAAGGGTCACTGCATCATTTAAGCAACAGTAAACCAATGAACTTGCTTCATGGCATTCCTACCAACATGGAGCCAAAACAGCTTGTCACTTTGCACCAATCTACCCAAACCCTTGGTAACTTTAACATGCGAGTCAGTATTCCTACTGCACAGAACAACCCCTTGTTGATGCAGATGGCTCAGTCTCAACCAAGAGGTCAGATGCTAAGTGAAAATGTTGATTCTCATGCAACCAGGTTTCCATCATCTTTGGTTCAGCCTACAGTACCAAATAGTATTTCGAATGGTGTTTTGGGAAATAGAATTACTGGCTCCAGCAACATAACTAGTGCTTATAATACAGTTCCACAAAACTCTTCATTGTTGAAGTACTGA 804 0.4353 MNQEGIDSYNNLINKAAGSTYGNHFLVTTYRESHGGGVGCVIDGCPPRIPLSEADMQVDLDRRRRKCCVSSKTEWSFTAAQQQGNLTNSFISSQEATFGLPAQSLAKLQVTALGRTTAKAGVSMPLSDQKNLFSFESPRLRFAEGSLHHLSNSKPMNLLHGIPTNMEPKQLVTLHQSTQTLGNFNMRVSIPTAQNNPLLMQMAQSQPRGQMLSENVDSHATRFPSSLVQPTVPNSISNGVLGNRITGSSNITSAYNTVPQNSSLLKY 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01448 267 Gene3D Chorismate synthase AroC 19 75 IPR035904 -
Vimu5g01448 267 Pfam Chorismate synthase 25 66 IPR000453 GO:0004107|GO:0009073
Vimu5g01448 267 SUPERFAMILY Chorismate synthase, AroC 19 66 IPR035904 -
Vimu5g01448 267 PANTHER CHORISMATE SYNTHASE 19 65 IPR000453 GO:0004107|GO:0009073
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01448 Vimu-Chr5 25381146 25383701 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01448 79 265 Response Regulator Gene Family AT3G16857 33.636 3.33e-18 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01448 - K14491 gmx:100809583 289.271