Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01447 ATGTTTGCACGAAGAGATGCAGAAGAAATGTTTAAACTAGGAAACATCAAAGGGGCCATCACTTGTGCCACCATGGCCAAAACACTAGACCCAAAAGTTGATGGCATTGACGAAACAATCTTAGCATACAAGATCCACCAGGCAGCAATGAAAAAAGATGACAACGGTGCAACAAATTGGTATAAAGTTCTTGGCATTAAGAAAGGCTTTGAGGATGACATTGAAAGCATCAAGATGCAACACAAAAAATTAGTAATTATGCTGAATCCATCCAAGAACGCTTCAGTCGCAACTTGGGGTGCTTTTAGACTCATTTACAATGCTTGGAAACACCTAAGTGACTCAAATTATAAAAATGTGAATTTAAGAAGAAAGACGACTCTCATCGCAACAAAGTTACCAAAAGTTCATGTTTACGATGTAGAAAATGGTGCAAATACGAAGTTTCAAAGATTTCAAGTGCACACAAACATAGAGACCGCACTAAAAGAGTTTTATTAA 501 0.3733 MFARRDAEEMFKLGNIKGAITCATMAKTLDPKVDGIDETILAYKIHQAAMKKDDNGATNWYKVLGIKKGFEDDIESIKMQHKKLVIMLNPSKNASVATWGAFRLIYNAWKHLSDSNYKNVNLRRKTTLIATKLPKVHVYDVENGANTKFQRFQVHTNIETALKEFY 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01447 166 PANTHER BNAC03G44070D PROTEIN 5 125 - -
Vimu5g01447 166 CDD DnaJ 59 114 IPR001623 -
Vimu5g01447 166 Gene3D DnaJ domain 37 120 IPR036869 -
Vimu5g01447 166 SUPERFAMILY Chaperone J-domain 58 119 IPR036869 -
Vimu5g01447 166 SMART dnaj_3 58 117 IPR001623 -
Vimu5g01447 166 Pfam DnaJ domain 59 117 IPR001623 -
Vimu5g01447 166 ProSiteProfiles dnaJ domain profile. 59 130 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01447 Vimu-Chr5 25358255 25358755 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01447 7 119 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 27.586 2.51e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01447 - - qsa:O6P43_028986 94.7449