Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01445 ATGGCCTTAGATAACTTGGAGGAGATTGTGCCCCAAAACGAAAAGTGGAAATCTTCCAATGAAGTCATTGCAGATTCTGATATAAATGCCTCTAGTGGCTTTGACTGCAACATCTGCCTCGAGTGTGTGCAAGAACCAGTGGTCACACTCTGTGGTCATCTTTATTGCTGGCCATGCATATACAAATGGCTTCATTTTGAACGTACCTCTTTTGACGGTGAAGAGCAACAGAGTCCACGATGTCCAGTATGCAAATCAGAAGTTTCTCAATCTTCCCTTGTTCCATTATATGGCCGTGGCCTTACCACAAGACCTTCTAAGGGGAAAACACATCAAGTTGGGACTGTCATACCACAAAGACCTCATGGTCCCAGATTATTGAATACCAGCAGTGTTTCCCAACCTATTTCTCAAAGTTATCATCATCCCTATAGTAATCCTTATTATACTCAGCAATTCAACTCAGTTCCAAACGGTTATACCTCACCGATGCTCAGAACAAGTGGTTCACTAGACAACACATTTGGAATCTTTGGTGAGATGATATATGCAAGGGTGTTTGGTAACCAGGGATCAGTAACCCAAGGATGA 591 0.4264 MALDNLEEIVPQNEKWKSSNEVIADSDINASSGFDCNICLECVQEPVVTLCGHLYCWPCIYKWLHFERTSFDGEEQQSPRCPVCKSEVSQSSLVPLYGRGLTTRPSKGKTHQVGTVIPQRPHGPRLLNTSSVSQPISQSYHHPYSNPYYTQQFNSVPNGYTSPMLRTSGSLDNTFGIFGEMIYARVFGNQGSVTQG 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01445 196 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 13 190 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vimu5g01445 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 115 IPR013083 -
Vimu5g01445 196 Pfam Zinc finger, C3HC4 type (RING finger) 36 84 IPR018957 GO:0046872
Vimu5g01445 196 SUPERFAMILY RING/U-box 23 91 - -
Vimu5g01445 196 SMART ring_2 36 84 IPR001841 -
Vimu5g01445 196 ProSiteProfiles Zinc finger RING-type profile. 36 85 IPR001841 -
Vimu5g01445 196 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01445 Vimu-Chr5 25269745 25270378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01445 29 188 C3H Transcription Factor Family AT4G27470 41.040 6.99e-39 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01445 K10666 - gmx:100807729 332.028