Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01439 AGGAATCCACGCAAGGGCGTTCGCTTGTGGCTCGACACCTTCACCACCGCAGAAGAAGTCGTACGCGCCTACGACGTCGCCACCGTACACATCCACGAAGTCAAGGCCAAGCTCAACTTCCCTGAGCATCACCGCTACCCACCCAACATGAACAACAACCCATGCCTTAGCCCCGAGTTCAATCAGTCATGTTATCAACCCAATATTAATAACCTCGACCACAACCCTCAACTCGCGCAACATATATCCAACCTAGAATCGTTTCTCGGTTTGGAGCAGGAACAACTTTCGATGCAGCCAGGGCAAAACCACGCAGAGAAACCCAATAGTAAACCGCGCCGCCAGGAGTTAGGGCAAAACCACCATCTCCCTCATGCTTTTATCAACTTGCAAAGTGGGAACCACAGTCGCAAAAAGCAAAAAAAGAGACCCTAA 435 0.508 RNPRKGVRLWLDTFTTAEEVVRAYDVATVHIHEVKAKLNFPEHHRYPPNMNNNPCLSPEFNQSCYQPNINNLDHNPQLAQHISNLESFLGLEQEQLSMQPGQNHAEKPNSKPRRQELGQNHHLPHAFINLQSGNHSRKKQKKRP 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01439 144 MobiDBLite consensus disorder prediction 94 117 - -
Vimu5g01439 144 Gene3D AP2/ERF domain 1 43 IPR036955 GO:0003700|GO:0006355
Vimu5g01439 144 ProSiteProfiles AP2/ERF domain profile. 1 41 IPR001471 GO:0003700|GO:0006355
Vimu5g01439 144 PANTHER DNA-BINDING DOMAIN 1 104 IPR044808 GO:0003700|GO:0009873
Vimu5g01439 144 SUPERFAMILY DNA-binding domain 3 42 IPR016177 GO:0003677
Vimu5g01439 144 CDD AP2 1 43 IPR001471 GO:0003700|GO:0006355
Vimu5g01439 144 SMART rav1_2 1 47 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01439 Vimu-Chr5 25155330 25155764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01439 1 88 AP2-EREBP Transcription Factor Family AT2G47520 39.216 2.91e-15 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01439 K09286 - vra:106752604 87.0409