Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01437 ATGTCGAGGACTTCAATGTTTCCTGCTACTGCCTATAATCCACCTGAAGATTCTTTAAGCCAAGATGTGATTGCGACTGTAGAGAAGAGTATGAAAAAATATGCTGACAACCTCATGCGTTTTCTAGAGGGAATTAGTTCAAGGCTATCACAGTTGGAATTATACTGTTACAATCTTGACAAATCTATTGGGGAAATGAGATCAGATTTAACTCGTGACCATGTGGAGCAAGATTCAAGGCTGAAATCTCTTGAAAAGCACCTTCAAGAAGTGGAAATGGGAGGAGACAAAAAAAAGGGTGTACCTTTGTTCCTTGGCTATACTGCATGGAATTGTGAGTGGGGAGACAATTGGACCTTGTGGCGGTTTGAAACTGTGAGAAATTGTGCAGTCCGACGGATATCCAAGCACAGCCACGAGGTAATTTCAAAAGACGAAGTTATCTCCAATTGTGTTGCAGGATATTCTAGTGTTCCTAGCTTGCCCAGTGCTACAAGTGTCAAATGGTTTAGTTGGTCTTACGACAGATCTCTGGCCCAGCGTGGATTTGGATTAGAAGTACCATACTGGGTTCACAGGTCTGTACAAATTTTAAGAGACAAGCAAGAGCTGGCTGACACTCAGAAAGAATTGGCCAAGCTTCAACTTGCTCAGAAAGAATCATCTTCCTCCACCCATTCACAGTCCAATGAGGAGAGATCATCACCAACCACAGATCCTAAAAAAACTGACAATGCATCTGATGCAAACAACCAGCAGTTGGCTCTTGCTCTACCTCATCAAATTGCCCCTCAGCAGCAGCCTGCAGCACCTCCTACTCAGGCTCAGGCACCTGCACCAAATGTAACTCAAGCCCCTCAGCAACCTCCTTATTACATGCCTCCCACCCCTCTGCAGAATCCACCTGTGCCCCAGCTTCCTCAGAACCAGTATTTGCCTTCTGATCAACAATATCGAACTCCCCAACTAGCCCCACAACCAACACCATCTCAAGTAACACCGTCCCCACCTGTGCAACAATTTTCTCACTATCAACAGCAACAGCCACAACCTCAACAACAACAGCAGCAGCTCCAGCAGCAACAACAGTGGTCACAGCAGGTGCCATCACCTCAGCCACCCTCAATGCAATCTCAAACAAGACCCCCCTCTCCAGCTATGTACCCTCCATACCAGCCGAACCAAGCAACAAACCCATCACCTGCAGAAACACTTCCAAATAGCATGCCCATGCAAGTGCCATATTCAGGAGTTCCACCGCCAGGATCTAGCCGAGCTGACACAATACCATATGGATATGGAGGAGCTGGAAGAACAGTTCCACAACAGCCTCCACCCCAGCAGATGAAGGGTTCTTTTCCTGCACCACCAGGTGAAATGTATGGGCCTACTGGTTCTCTCCCGGCCCTTCCTCCTCCTGGTAGTGCATACATGATGTATGAGGGTGAGGGAGGAAGAACACATCATCCGCCACAACCTCATTTTACTCAACCTGGATATCCTCCAACAAGTGGTTCCCTTCAGAACCCCCCAAGCCATAATCTTATGGTTCGAAATCCCAACCAGTCGCAGTTTGTCCGCAACCATCCCTACAATGAGTTAATTGAGAAATTGGTGAGCATGGGATTCAGGGGAGACCATGTTGTCAGTGTGATCCAGAGGATGGAGGAGAGTGGACATGCCATTGATTTCAATTCGGTACTTGACAGGTTGAATGTGCATAGCTCTGTGGGTCCTCAGAGAGGATGGTCAGGTACCGAGGAAATCGAGGATAAGGCGTCCATCGGAACATCGTCCAGTGGGGTGATGAAAGTGGGTTTGGCCGTAAGGAGGGAGCAAACAATTGGGACTCTGGGGAGGGGAAATGAAATTCAAGTTACCAGTATCAGTGAGAGAATCTCCGAAGCTCTGAAGAGTGAGGAGTAG 1926 0.4766 MSRTSMFPATAYNPPEDSLSQDVIATVEKSMKKYADNLMRFLEGISSRLSQLELYCYNLDKSIGEMRSDLTRDHVEQDSRLKSLEKHLQEVEMGGDKKKGVPLFLGYTAWNCEWGDNWTLWRFETVRNCAVRRISKHSHEVISKDEVISNCVAGYSSVPSLPSATSVKWFSWSYDRSLAQRGFGLEVPYWVHRSVQILRDKQELADTQKELAKLQLAQKESSSSTHSQSNEERSSPTTDPKKTDNASDANNQQLALALPHQIAPQQQPAAPPTQAQAPAPNVTQAPQQPPYYMPPTPLQNPPVPQLPQNQYLPSDQQYRTPQLAPQPTPSQVTPSPPVQQFSHYQQQQPQPQQQQQQLQQQQQWSQQVPSPQPPSMQSQTRPPSPAMYPPYQPNQATNPSPAETLPNSMPMQVPYSGVPPPGSSRADTIPYGYGGAGRTVPQQPPPQQMKGSFPAPPGEMYGPTGSLPALPPPGSAYMMYEGEGGRTHHPPQPHFTQPGYPPTSGSLQNPPSHNLMVRNPNQSQFVRNHPYNELIEKLVSMGFRGDHVVSVIQRMEESGHAIDFNSVLDRLNVHSSVGPQRGWSGTEEIEDKASIGTSSSGVMKVGLAVRREQTIGTLGRGNEIQVTSISERISEALKSEE 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01437 641 Pfam UBA-like domain (DUF1421) 531 575 IPR010820 -
Vimu5g01437 641 MobiDBLite consensus disorder prediction 397 411 - -
Vimu5g01437 641 MobiDBLite consensus disorder prediction 375 396 - -
Vimu5g01437 641 MobiDBLite consensus disorder prediction 309 326 - -
Vimu5g01437 641 MobiDBLite consensus disorder prediction 267 282 - -
Vimu5g01437 641 MobiDBLite consensus disorder prediction 215 247 - -
Vimu5g01437 641 PANTHER RECEPTOR-LIKE KINASE, PUTATIVE (DUF1421)-RELATED 191 585 - -
Vimu5g01437 641 Coils Coil 197 217 - -
Vimu5g01437 641 MobiDBLite consensus disorder prediction 283 308 - -
Vimu5g01437 641 MobiDBLite consensus disorder prediction 335 374 - -
Vimu5g01437 641 MobiDBLite consensus disorder prediction 263 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01437 Vimu-Chr5 25139353 25146747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01437 4 94 Trihelix Transcription Factor Family AT5G14540 29.670 1.45e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01437 - - vum:124822732 543.888