Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01433 ATGTCTTCCAACGCCATTGTCCAATACACCGCTTCTTCATCTCATGCAATTAACAGATACGATGTATTTGTGAGCTTCCGTGGTGAAGACACACGCAACAACTTCACTGGTTTTCTCTTTCAAGCTCTTCGTAGAAAAGGCATCGATGCCTTCAAAGATGATCAAGATCTCAAAAAAGGTGAATCCATAGCCCCCGAGCTCCTCCATGCCATTCAAAGCTCTCGACTTTTCATTGTTGTTTTCTCTAAGAACTATGCTTCCTCCACCTGGTGCTTGCGTGAACTGGCAGAGATACGTAACTGCGTTCAAACTTCCCCAAGACCTGTTATACCTGTCTTTTATGACGTTGATCCTTCGGTGGTGCGCAAACAAAGTGAATGTTATGAGAAAGCATTTGCAGAACACGAAAAGAGATTCAGAGAAAACGAAGCGAAGATGGAGGAAGCTGAGAGATGGAGAGAAGCTCTCAAAGAAGTGGCCGATCTCTCTGGTTGGGATATTCGAAATAAGCCTCAATATGCAGAAATTGAAAAAATTGCTCAAACCGTAACAAATATTTTGGGTCCCAAAATTTGTAGTCTTCCAAAGGATGAACTAGTTGGTATAGAGCGTCGACTTGAAAAATTAGAAAATCTTGTTTGTTTTGAGTTAGTTAACAGTGTTCGAGTTGTTGGAATCAGTGGGATGGGTGGCATAGGAAAGACTACTCTTGCTCGAGCTTTATACGAAAGAATCTATCATCATTATGATTTTCATTGTTTTATTGATGATGTAAGCAAAATATATCGAGATTCAAGTTCATTAGGTGTTCAAAAGCAGTTAATTTCTCAGTTTCTAAATGAGAAAAATCTAGAGATTTCAAATTCTTTTGAGGGAACATGTTTGATTTGGTCTATGCTGCGCAATGTTAGGGCACTTGTAGTTCTGGACAACGTTGATGAAGTTGAACAACTAAGGATGTTTACAGGGAACAGAGACACTTTGTTGCGTGAATGCTTAGGTGGAGGGAGCATAATCATCCTAGTTTCTAGGGATGAACATATATTGAGGACACATGGAGTAGATGACATTTATCAAGTCCAACCGTTGAATTACGAAAATGCTATGCAGCTGTTTTGTAGAAATGCATTCAAATTTAATCATATTTTGAGTGATTACGAAAAGTTGGCATGGGATATACTATCTCATGCTCAGGGCCATCCCTTGGCAATTAAAGTAATTGGATCATCTTTGTTTGGTCGAAATGTGTCACAATGGGAAAGTGCATTGGCCAGGCTAAAAGAAAAACAAAGTAAAAATATTATGGATGTTTTGCGTATAAGTTTTGATCAGCTGGATGAAGAAGACAAACAAATATTTTTGGATATTGCATGTGCCCTATACTATTATGATGAGAAATATGTGACGGAAGTTCTAAAGTTTCGTGGATTTCATCCTGAATATGGTCTACAAGACTTGGGCAGGTATATTGTCAAAGAGGAATCACCAAAGGAACCCCTAAAGAGGAGTAGGTTGTGCAATTACCAAGATTTCCTCAAAGCTATGTCGAACAATCAGACAACTGAAATTCTTGAAGTCTTAGCTGTAAATTCAGATGGGAGTTCTAAAACTGTAAGGGTAGATGGTCTATCGAAAATTAAACACCTTAAGTTTCTTAGACTTGAGAACATGAAGTGTTCAGGAAGTCTCAATCATCTTTCCAGTGAACTAGGATATCTTATTTGGAACAATTATCCTTTTAAGTGTTTGCCTCAAAGTTTTCAGCCACACCAACTAGTTAAGTTAAAATTGAAAGGGAGCAGTATTCAACGACTATGGAGTGGCACAAAGGTGCTACCTAATTTGAAGCGTTTGGATCTCTCTTACTCCAAAGAATTAGTTGAGATGCCAGATGTTGCAGAGGCCCTAAATCTTGAAGGCATAGATCTTGAAGGATGCATAAAGCTCCGAAAACTCAGTCCATCGATTGGTCTTCTGAGCAAGCTTACTACTTTGAATTTAAAAAATTGTGAAAACTTAGTAAGCTTACCCAATAGCATATTGTGCCTGAATTCCCTTGAATATCTGAGTGTCTATGGTTGTTCAAATCTGTTTAATAATGAGTTATTAGACGAAGCAAGTAACACAGAGCATTTGAAGAAGCTTTGTTCACTTAAAGGTCCTATTCAGTCCCACTCAACATCCCCTTTAATAAAAAAAGCACAAAGAGAGTCAGTTAGTTGTTTGTTACCCTCCTCTCCTACTCTCCCTTGTTTGCGTGAACTCGATCTAAGATTCTGTAACTTAGTTAAAATCCCTAATGCCATTGGAAAGTTAAGTTGCTTAGAAAAGTTAAATTTGAAGGGAAACAATTTTGTTACATTGCCTAACCTCAAGGACCTTTTCAGACTTTATTATTTAAACTTAGAGGATTGCAAGAGATTGAAATACTTGCCTGATCTCCCTTCACGAACTCACTTGCCCTTAAATCTTTACTCGTATCTGTTGCAATATTTTGAAGACTTCATCTATCAGGTGCCAAACGAAGATGAATTTATGGTTGGATTAACAATGTTCAACTGCCCAGAAATAGTTGAGAGGGAACGGTGCACTAGCATGACTGTTTCATGGATGCTACAAATTATGCAGTCGTGCTACAAGTCGGAATGTCTATCCTTTTCTTCAAGTCTTCGAAGTATTATCCCCGGAAGTGAAATACCAATGTGGTTCGACAATGAGCTTGTGAGCATGGACAATTCAATAATCATAGATGTCTCTCCTTTTGTGCATGACAATAATTGGGTTGGTGTTGTGTGCTGTGCAATACTTAGTGAAGATCTTTACAGAACAAGAATTCTTGACGATTTGAGAAGGGATCTATCTGTGGAACACTCAGATCATATGTGCCTATTTTATTACTCTCGTCAACAGTTCTGCCATGAAGAAGGCATATTTCGGGGCAAACTTAATACACATGACTTGAGTTTGACATTTAGATTACATGACGTGATAATACTTTGTGCAAACATGAAGGATAGGGACCAGGGATTTTATGAGTTTGAAGTGAAAAAATACGGATATCGGTTCGAAGAGTTTGATGCGCTGATGACGAATCCTTTTGTTGGAAGTCCCACATCGACTAGAGATAAGACCAATTCAGTGTATCTAAGTGGATGCAAACCTCACATTTCAAGCCGCGATATTTCTTGTTTCTTGGGCATTTCTATTCCAACCATTGTCGGGCCGTTATTGGACCACCTAATTTCTACAACCGTTGTCGGGCCGTTATTGGACCACCCAATTTCTACTATCACGCACGGGATGTCTATACCTCGGCGTGAAGGGGGTGTGTTTGGAAGTCCCACAGAGATAAGAGCCATGGTTAAAGCCTATCCTAGCGATGTTTCTTATTTCTTGGGCATTTCTATTCCACCCGTTGTCGGGCCGCTATCGGACTACCCAATTTCTACTATCACGCTCGTGATGTCTATACCTTGGCGTGAAGGGGTGTGTTGGAAGTTCCACATCGACTAG 3513 0.3931 MSSNAIVQYTASSSHAINRYDVFVSFRGEDTRNNFTGFLFQALRRKGIDAFKDDQDLKKGESIAPELLHAIQSSRLFIVVFSKNYASSTWCLRELAEIRNCVQTSPRPVIPVFYDVDPSVVRKQSECYEKAFAEHEKRFRENEAKMEEAERWREALKEVADLSGWDIRNKPQYAEIEKIAQTVTNILGPKICSLPKDELVGIERRLEKLENLVCFELVNSVRVVGISGMGGIGKTTLARALYERIYHHYDFHCFIDDVSKIYRDSSSLGVQKQLISQFLNEKNLEISNSFEGTCLIWSMLRNVRALVVLDNVDEVEQLRMFTGNRDTLLRECLGGGSIIILVSRDEHILRTHGVDDIYQVQPLNYENAMQLFCRNAFKFNHILSDYEKLAWDILSHAQGHPLAIKVIGSSLFGRNVSQWESALARLKEKQSKNIMDVLRISFDQLDEEDKQIFLDIACALYYYDEKYVTEVLKFRGFHPEYGLQDLGRYIVKEESPKEPLKRSRLCNYQDFLKAMSNNQTTEILEVLAVNSDGSSKTVRVDGLSKIKHLKFLRLENMKCSGSLNHLSSELGYLIWNNYPFKCLPQSFQPHQLVKLKLKGSSIQRLWSGTKVLPNLKRLDLSYSKELVEMPDVAEALNLEGIDLEGCIKLRKLSPSIGLLSKLTTLNLKNCENLVSLPNSILCLNSLEYLSVYGCSNLFNNELLDEASNTEHLKKLCSLKGPIQSHSTSPLIKKAQRESVSCLLPSSPTLPCLRELDLRFCNLVKIPNAIGKLSCLEKLNLKGNNFVTLPNLKDLFRLYYLNLEDCKRLKYLPDLPSRTHLPLNLYSYLLQYFEDFIYQVPNEDEFMVGLTMFNCPEIVERERCTSMTVSWMLQIMQSCYKSECLSFSSSLRSIIPGSEIPMWFDNELVSMDNSIIIDVSPFVHDNNWVGVVCCAILSEDLYRTRILDDLRRDLSVEHSDHMCLFYYSRQQFCHEEGIFRGKLNTHDLSLTFRLHDVIILCANMKDRDQGFYEFEVKKYGYRFEEFDALMTNPFVGSPTSTRDKTNSVYLSGCKPHISSRDISCFLGISIPTIVGPLLDHLISTTVVGPLLDHPISTITHGMSIPRREGGVFGSPTEIRAMVKAYPSDVSYFLGISIPPVVGPLSDYPISTITLVMSIPWREGVCWKFHID 1170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01433 1170 ProSiteProfiles TIR domain profile. 18 187 IPR000157 GO:0007165
Vimu5g01433 1170 ProSiteProfiles Leucine-rich repeat profile. 774 795 IPR001611 GO:0005515
Vimu5g01433 1170 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 188 - -
Vimu5g01433 1170 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 698 IPR044974 GO:0006952
Vimu5g01433 1170 Gene3D - 17 189 IPR035897 -
Vimu5g01433 1170 Gene3D Ribonuclease Inhibitor 731 833 IPR032675 -
Vimu5g01433 1170 Gene3D - 363 446 IPR042197 -
Vimu5g01433 1170 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 456 IPR027417 -
Vimu5g01433 1170 Gene3D - 190 355 IPR027417 -
Vimu5g01433 1170 SUPERFAMILY L domain-like 539 834 - -
Vimu5g01433 1170 PRINTS Disease resistance protein signature 299 313 - -
Vimu5g01433 1170 PRINTS Disease resistance protein signature 223 238 - -
Vimu5g01433 1170 PRINTS Disease resistance protein signature 397 411 - -
Vimu5g01433 1170 PRINTS Disease resistance protein signature 610 626 - -
Vimu5g01433 1170 Pfam TIR domain 20 188 IPR000157 GO:0007165
Vimu5g01433 1170 SMART till_3 19 162 IPR000157 GO:0007165
Vimu5g01433 1170 Coils Coil 142 162 - -
Vimu5g01433 1170 Gene3D Ribonuclease Inhibitor 507 719 IPR032675 -
Vimu5g01433 1170 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 165 IPR035897 -
Vimu5g01433 1170 Pfam NB-ARC domain 220 434 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01433 Vimu-Chr5 25088119 25094390 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01433 198 815 WRKY Transcription Factor Family AT5G45050 30.849 2.56e-69 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01433 - - vra:106780741 1388.63