Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01430 ATGGGTGGCATAGGAAAGACTACTCTTACTCGAGCTTTATACGAAAGAATCTATCATCAATATGGTTTTCATTGTTTTATTGATGATGTAAGCAAAATATATAAAGATTCAAGTTCATTAGGTTTACAAAAGCAGTTAATTTCTCAGTCTCTAAATGAGAAAAATCTAGAGATTTCAAATTCTTTTGAGGGAACACGTTTGGTGTGGTCTAGGCTGCGCAATGTTAGGGCACTTGTAGTTCTGGACAATGTTGATGAAGTTGAACAACTACAGATGTTTACAGGGAAGAGAGACACTTTGTTGCGTGAATGCTTAGGTGCAGGGAGCATAATCATCGTAGTTTCTAGGAATGAACATATATTGGAGACACATGGAGTAGATTACATTTGTCAAGTCCGACCGTTGAGTGACGAAAATGCTATGCAGCTGTTTTGTAGAAATGCTTTCAAAGTTAATTATATTTTGAGTGATTATGAAAAGTTGGCAATGGATGTACTATATTATGCTGAGGGCAATCCCTTGGCAATTGAAGTAATTGGGTCATCTTTGTTTGGTCGAAATGTGTCACAATGGGAAAGTGCATTAGCCAGGTTAAAAGAAAAGAAAAGTAAAAAAATTATGGATGTTTTGCGTATAAGTTTTGATCAGCTGGATGAAGAAGAGAAAGAAATATTTTTGGATATTGCATGTGCCCTATGCAATTATGATGAGGAATATGTGAGGGAAGTTCTAAACTTTCGTGGATTTCATGCTGATTATAGTCTACAAGTTCTACTTGAGAAATCACTAATATCAAAAATGGGTACGCGTATTTATATGCACAACTTGTTGAAGGACTTGGGCAGGTATATTGTGAAAGAAGAATCACCTAAGGAACCCCTAAAGAGGAGTAGGTTATGGGATTACCAAGATTTCTGCAAAGCTATGTCGAACAATAAGACAACTCAAATTCTTGAAGTCATAGCTGTCAATTCAGGTTGGATTTCAGGTTGGAAATCTGAAACTGTGAGGGTAGATGGTCTATCGAAAATTGAAAAACTTAAATTTCTTAGACTTGAGAATGTGAAGTGTTCAGGAAGTCTCAGTCATCTTTCCAATGAACTTGGATATCTTACTTGGAACAACTATCCTTTTGAGTGTTTGCCTCAAAATTTTGAGCCACACAAACTAGTTAAGTTAAAATTGAGAAATAGCAGAATTCAAAGACTATGGAGTGGCACAAAGGAGCTACCTAATTTGAAGCATTTGGATCTCTCTTACTCCGAAAAATTAGTTGAAATGCCAGATGTTGCAAAGGCCCTAAATCTTGAAGAAATACTTCTTGAAGATTGCATAGAGCTCCGAAAACTCAGTCCATCTATTGATCTTCTGAGGAAGCTTACTATTTTGAGTTTGAGAAACTGTATAAACTTAGTAAGCGTACCCAATAGCATATTGGGCTTGAACTCTCTTGAATATCTGAGTGTCTATGGTTGTTCAAAACTATTTAATAATGAGTTATTAGAAGAAGCAAGTAACACAGAGCATTTGAAGAAGCTTTGTTCAGTTGAAGGTCCTCTTCAGTCCCACTCAACATCCCCATTAATAAAAAAAGCACGAAGAGAGTCAGTTAGTTGTCTATTACCCTCCTTTCCTACTCTCCCTTATTTGCGTGAACTCGATCTAAGCTGGTGTAAATTAGTTAAAATCCCTGATGTCATTGGAAAGTTGAGTTGCTTAGAAAAATTAAATTTGAAGGGAAACCATTTTGTTACATTGCCTAACCTCACAGACCTTTATAGACTGTATTATTTAAACTTAGAGCGTTGCTCGCGATTGAAATACTTGCCTGACCTCCCTTCACAAATCAACTTGACAACAAAGGTTTACTCGCATGAGGAGCAATATATGGAAGACATCTTTGTTTGTTTAAGAGCGAACGATATATATGTGGCAGGATTAAGGATGTTTTATTGCCCAGTAATAGTTGAGAGGGAACGGTGCACTGACATGGCTATTTCATGGATGCTACAAATTCTTCAGGTGTGCATGTTTCTTCCTTATACTATCCTTCTTTTAATCTCTTTTGATGTTGAAAAACAACTACTAACACATAACATAACTCAGTCGTGGTACAAGTCGAAATGTCTTACATCCCTTCCATTCCTCATAAGTCTTGGAAGTACTATCGATGGAAGTGAAATACCAAAGTGGTTCAACAATCAGCTTGTGAGCATGGATAATTCAATAATCATTGATGCCTCTCCTTTTGTGCATGACAATAATTGGGTTGGTGTTGTGTGTTGTGCAATACTTAATAAACATGCTTACAAATCAAGAATTTATGCGTATTCGGGAAGTGATCTATCTGTGTATGACTTTGATCATATGTGTCTATTTTATTACTCTCGTCAACAGTTCCTCCATGAACAACACATATTTCGGGGCAAACTTAATACACGTGACTTGAGTTTGACACTTGACTTAATATTCATATTTGACGTGTTACTTTGTCGAAAAAGGAAGGATGGGAACCAGGTATTTCCTAAGTTTAAAGTGAAAAAATATGGGTATCGGTGGGTAACTGTGCAAGATCTACATGATCCATGGTTGAAATTTGGCAGCTCCATACCTTCAAAAGACACAAAATTGTTATTGTAA 2640 0.364 MGGIGKTTLTRALYERIYHQYGFHCFIDDVSKIYKDSSSLGLQKQLISQSLNEKNLEISNSFEGTRLVWSRLRNVRALVVLDNVDEVEQLQMFTGKRDTLLRECLGAGSIIIVVSRNEHILETHGVDYICQVRPLSDENAMQLFCRNAFKVNYILSDYEKLAMDVLYYAEGNPLAIEVIGSSLFGRNVSQWESALARLKEKKSKKIMDVLRISFDQLDEEEKEIFLDIACALCNYDEEYVREVLNFRGFHADYSLQVLLEKSLISKMGTRIYMHNLLKDLGRYIVKEESPKEPLKRSRLWDYQDFCKAMSNNKTTQILEVIAVNSGWISGWKSETVRVDGLSKIEKLKFLRLENVKCSGSLSHLSNELGYLTWNNYPFECLPQNFEPHKLVKLKLRNSRIQRLWSGTKELPNLKHLDLSYSEKLVEMPDVAKALNLEEILLEDCIELRKLSPSIDLLRKLTILSLRNCINLVSVPNSILGLNSLEYLSVYGCSKLFNNELLEEASNTEHLKKLCSVEGPLQSHSTSPLIKKARRESVSCLLPSFPTLPYLRELDLSWCKLVKIPDVIGKLSCLEKLNLKGNHFVTLPNLTDLYRLYYLNLERCSRLKYLPDLPSQINLTTKVYSHEEQYMEDIFVCLRANDIYVAGLRMFYCPVIVERERCTDMAISWMLQILQVCMFLPYTILLLISFDVEKQLLTHNITQSWYKSKCLTSLPFLISLGSTIDGSEIPKWFNNQLVSMDNSIIIDASPFVHDNNWVGVVCCAILNKHAYKSRIYAYSGSDLSVYDFDHMCLFYYSRQQFLHEQHIFRGKLNTRDLSLTLDLIFIFDVLLCRKRKDGNQVFPKFKVKKYGYRWVTVQDLHDPWLKFGSSIPSKDTKLLL 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01430 879 Gene3D Ribonuclease Inhibitor 533 625 IPR032675 -
Vimu5g01430 879 Gene3D - 134 218 IPR042197 -
Vimu5g01430 879 PRINTS Disease resistance protein signature 169 183 - -
Vimu5g01430 879 PRINTS Disease resistance protein signature 408 424 - -
Vimu5g01430 879 PRINTS Disease resistance protein signature 71 85 - -
Vimu5g01430 879 ProSiteProfiles Cro/C1-type HTH domain profile. 188 217 IPR001387 -
Vimu5g01430 879 SUPERFAMILY L domain-like 273 620 - -
Vimu5g01430 879 Gene3D Ribonuclease Inhibitor 309 517 IPR032675 -
Vimu5g01430 879 ProSiteProfiles Leucine-rich repeat profile. 572 593 IPR001611 GO:0005515
Vimu5g01430 879 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 582 IPR044974 GO:0006952
Vimu5g01430 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 228 IPR027417 -
Vimu5g01430 879 Pfam Leucine Rich Repeat 389 408 IPR011713 -
Vimu5g01430 879 Pfam NB-ARC domain 1 206 IPR002182 GO:0043531
Vimu5g01430 879 Gene3D - 1 128 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01430 Vimu-Chr5 25069753 25072582 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01430 1 616 WRKY Transcription Factor Family AT5G45050 31.473 9.89e-69 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01430 - - vum:124845879 1142.1