LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu5g01425	ATGTCAAACCTTCTCCTCTTTTCCCTTCTTCTCACCACAAACCTTATCTTTCTAACCTCAGTTTCATCCACAGAGTTCATCTACAACACCAACTTCAACTCCTCCAACACTCTTATCTATGGCAACGCCACTATTCAATCTTCCATTCTCACCCTTACCAATAGCTCCACCTTCTCTGTGGGCCGTGCTTTCTACCCTTCCAAGATCCCCACCAAATCTTCCAACTCTTCCACCCCTTTACCTTTCTCAACCTCCTTCATTTTCTCCATTGCTCCATTCAAAGGCCTTCTCCCTGGCCATGGCTTTGTCTTCATATTCACACCTTCTGCAGGCACCACTGGGGTGAGTTCTGCTCAGCATCTGGGCCTCTTCAACTTAACCAACAATGGTGATCCCAACAACCATGTCTTTGGCATTGAGTTTGATGTGTTTGACAACCAAGAGTTCGATGACATCGATGAAAATCATGTGGGGGTGGACGTTAACTCTCTTGTTTCTTTTGCTTCCCATGCTGCTGGATTTTGGGGTGGGAACGATGGTGACAGGTTTGAGGATTTGAAGCTTAATAATGGTGAAAACTATCAAGTGTGGATTGACTATTTAGATTCCAGAGTTAATGTTACGATGGCTCTTGCAGGCCAAAATAGACCCAAGAAGCCTTTGATTAGTGAACTTCTGGATCTTTCTGAAGTGCTTTTGGATGAAATGTATGTTGGATTTTGTGGGGCAACAGGGCAGCTAGTGGAGAGTCATAAGATTTTGGCTTGGAGCTTCAGTAACTCAAATGTTTCTATCGGTGATGCTTTAGTTACTTCAAATCTGCCTTCATTTGTGCTTCCCAGAGAATCTATTCTTAGGTCAAAAGGTTTTGTTGTAGGGATCACCATAGGTGTTTTGTTTGTCATCGGTAGTGCAGTTGTAATGTTTGTGTTTTTGCTCAGAAGAAAAAGGAGCAAAAGAAAGGAGGAGGAAGAAGACATTGAAGACTGGGAACTAGAGTATTGGCCACACCGTGTAAGATATGAGGACATTTATGCTGCAACTAAAGGATTTTCAGACCAAAATGTAATTGGGTTTGGAGGGAATGGAAAAGTGTATAAAGGGCTTCTCCAAGGAGTGCAAGTTGCAGTCAAAAGAATTCCTTATGACAGTAAACATGGAATGAGAGAGTTTTTGTCTGAGATTTCAAGTTTAGGCAGGTTGAAGCATAGGAATGTGGTTGCATTGAGAGGTTGGTGTAAGAAGGAGAAAGGGAGCTTGATTTTAATATATGACTATATGGAAAATGGAAGTTTAGATAAAAGAATATTTGATGGTGATGAGAACACAGTTTTTGGTTGGGAGGAGAGAGTGAAGGTGCTGAAGGATGTAGCTCATGGTATATTGTATTTGCATGATGGTTGGGAGGTTAAGGTGTTGCACAGAGACATCAAGTCAAGCAATGTGTTGCTTGATAAGGATATGAATGCAAGATTGGGGGATTTTGGACTTGCCACAATGCATCATCATGAGCAGATAGGTCACACATCACAAGTGATTGGAACTGTTGGTTTCATGGCACCAGAACTTGTTCATAAAGGGAGAGCCTCAACTCAGAGTGATGTGTTCAGCTTTGGAGTGTTGGTTTTAGAGGTGGTGTGTGGGAGAAGGCCAAATGAGGAAAACAAGCCAACCTTGGTTGTTTGGTTGATGGGGCTAATGGAGAAAGGAGAAGAGTGTTGTGGTCTTGATGAAAGATTAAAAGGGAGAAGTGAATGTGAATGTAAGATTGATGAGGTTAAGAGGGTTATTCATCTTGGTTTGTTGTGCACTCATCCTGATCCCCAAGTTAGGCCAAGTATGAGACAGGTTGTGAAAGTGCTTGAGGGAGAGGATTTAGATGGAAGCTTGGTTGAGAAAATAAATTCAGCAGCTCAATATGTTGGCAGCTTTGGTAACAGAACTCACCCCACAATTCAGGATATTTTTGCCTCCCACAGCTCTTACTCTACTGTGTGTAACACTGAGGGCAGATGA	2016	0.4236	MSNLLLFSLLLTTNLIFLTSVSSTEFIYNTNFNSSNTLIYGNATIQSSILTLTNSSTFSVGRAFYPSKIPTKSSNSSTPLPFSTSFIFSIAPFKGLLPGHGFVFIFTPSAGTTGVSSAQHLGLFNLTNNGDPNNHVFGIEFDVFDNQEFDDIDENHVGVDVNSLVSFASHAAGFWGGNDGDRFEDLKLNNGENYQVWIDYLDSRVNVTMALAGQNRPKKPLISELLDLSEVLLDEMYVGFCGATGQLVESHKILAWSFSNSNVSIGDALVTSNLPSFVLPRESILRSKGFVVGITIGVLFVIGSAVVMFVFLLRRKRSKRKEEEEDIEDWELEYWPHRVRYEDIYAATKGFSDQNVIGFGGNGKVYKGLLQGVQVAVKRIPYDSKHGMREFLSEISSLGRLKHRNVVALRGWCKKEKGSLILIYDYMENGSLDKRIFDGDENTVFGWEERVKVLKDVAHGILYLHDGWEVKVLHRDIKSSNVLLDKDMNARLGDFGLATMHHHEQIGHTSQVIGTVGFMAPELVHKGRASTQSDVFSFGVLVLEVVCGRRPNEENKPTLVVWLMGLMEKGEECCGLDERLKGRSECECKIDEVKRVIHLGLLCTHPDPQVRPSMRQVVKVLEGEDLDGSLVEKINSAAQYVGSFGNRTHPTIQDIFASHSSYSTVCNTEGR	671

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu5g01425	671	Gene3D	-	22	271	-	-
	Vimu5g01425	671	FunFam	Putative L-type lectin-domain containing receptor kinase VII.2	312	426	-	-
	Vimu5g01425	671	CDD	STKc_IRAK	357	623	-	-
	Vimu5g01425	671	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	472	484	IPR008271	GO:0004672\|GO:0006468
	Vimu5g01425	671	SUPERFAMILY	Concanavalin A-like lectins/glucanases	22	263	IPR013320	-
	Vimu5g01425	671	ProSitePatterns	Protein kinases ATP-binding region signature.	357	378	IPR017441	GO:0005524
	Vimu5g01425	671	Gene3D	Transferase(Phosphotransferase) domain 1	427	636	-	-
	Vimu5g01425	671	SUPERFAMILY	Protein kinase-like (PK-like)	329	622	IPR011009	-
	Vimu5g01425	671	Coils	Coil	313	333	-	-
	Vimu5g01425	671	PANTHER	-	41	625	-	-
	Vimu5g01425	671	Gene3D	Phosphorylase Kinase; domain 1	312	426	-	-
	Vimu5g01425	671	FunFam	L-type lectin-domain containing receptor kinase S.4	427	633	-	-
	Vimu5g01425	671	Pfam	Legume lectin domain	24	262	IPR001220	GO:0030246
	Vimu5g01425	671	Pfam	Protein kinase domain	352	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu5g01425	671	FunFam	L-type lectin-domain containing receptor kinase S.4	22	266	-	-
	Vimu5g01425	671	SMART	serkin_6	351	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu5g01425	671	ProSiteProfiles	Protein kinase domain profile.	351	652	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu5g01425	671	CDD	lectin_legume_LecRK_Arcelin_ConA	24	261	IPR001220	GO:0030246

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu5g01425	Vimu-Chr5	25008415	25011002	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu5g01425	21	570	Receptor kinase-like Gene Family	AT4G04960	62.094	0.0	683

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vimu5g01425		Pkinase	1.1e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu5g01425	-		-	gmx:100807059	1090.87