Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01420 ATGGATCAGCTTGGAATTCAACCCCCTTCAACCAAGGTTGAAAGAAGGCTCGTTGAGAAGAACAGAAGAAACCAGATGAAGATCCTCTTCAACAAACTCAATTCTCTTCTCCCTAGCTACAACCCCAAGGAAGTATTACCACTGCCTGATCAAGTGGATGAGGCAATCAACTACATCAAGAGTTTGGAGGCGAAGGTGAAGATGGCGCAAGAGAAGAAAGAGAGTTTGCAGGGTGCTAAGAAAAGATACCGTGGTTGCTTCTCCAATAATAACGATGCTAATTTAGCTGCAGCACCACTCCCAAAATCTCCACAACTTGAGATTCAAGAAGTGGGTTCCTCCCTACAAGTTGTTCTGACTACAGGGATGGATAACCAGTTCATATTCTATGAAATCATTCGAATGCTGCATGAAGAGAACATAGAAGTTAGAAGTCTCAATTCCTCACTCACTGGAGACTCGGTGTTTCATGTTGTGCATGCTGAGATTCCTCAATCTTTTCTTCAATTTGGAGCCGCCAAAGTAAGTGAGAGGTTGAAAAGGTTTGTAAATGGATCATACAGTGACGTGGAAACACAACACGAGTGGTGGGATTTTGATATTGGCACTGATGATATCTGGGGTTTCTAG 630 0.4302 MDQLGIQPPSTKVERRLVEKNRRNQMKILFNKLNSLLPSYNPKEVLPLPDQVDEAINYIKSLEAKVKMAQEKKESLQGAKKRYRGCFSNNNDANLAAAPLPKSPQLEIQEVGSSLQVVLTTGMDNQFIFYEIIRMLHEENIEVRSLNSSLTGDSVFHVVHAEIPQSFLQFGAAKVSERLKRFVNGSYSDVETQHEWWDFDIGTDDIWGF 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01420 209 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 183 - -
Vimu5g01420 209 Coils Coil 52 79 - -
Vimu5g01420 209 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 10 62 IPR011598 GO:0046983
Vimu5g01420 209 Gene3D - 7 90 IPR036638 GO:0046983
Vimu5g01420 209 FunFam Transcription factor bHLH162 4 88 - -
Vimu5g01420 209 SMART finulus 16 68 IPR011598 GO:0046983
Vimu5g01420 209 Pfam Helix-loop-helix DNA-binding domain 13 63 IPR011598 GO:0046983
Vimu5g01420 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 10 82 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01420 Vimu-Chr5 24950263 24951416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01420 10 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 38.462 9.26e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu5g01420 HLH 2.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01420 - - vun:114170573 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01420 5 24950263 24951416 Vimu5g01420 5 24950263 24951416 ECH
Vimu4g01074 4 9150833 9151675 Vimu5g01420 5 24950263 24951416 PCT