Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01419 ATGATATCTTACAATATCAATATTAATTATTGGTGTTTTGCTTTAGCTATTGTTGTTGTTACCTTCATTTCAAACCTCAGTGTTGCAAAACAATCTAAAATAGATGGATTGAAAATGAATGTGATTGATCAATGTTGGAGATTGAATCCTGATTGGAGGATGAATCGACCTCAATTAGCAACGTGTTCTATTGGCTACACTGGTAAGATGACAAACAACACTGGGAAAGACCTCGTCCATTATAAAGTTATTGACCCTAGTGATGATCCTATAAGTCCTAAACCTGGGACCTTGAGATATGGAGCTTCTGTAATTCAAAGTAAAGTGTGGATCACATTCCAAAAAGACATGCATATTAAACTCGAAAGACCCCTTCTTATTAGTAGTTTTACAACCATTGATGGTCGAGGCGTTAATGTTGACATTGCTGAAAATGCATGTTTAATGATCTTTAAGGCCACAAATGTAATCATCCATAACATTCGACTTCATCATTGCAAACCTCAAGCTCCAGGGGTTGTGATGGGACCAGAAGGAAAGGTGATTCCTTTGGGCCATGTAGATGGAGATGCAATAAGATTGGTTACTGCTTCAAAGATTTGGATTGATCATAATACACTTTATAATTGTCAAGATGGCTTACTAGATGTAACACGGGGTTCAACTGATGTGACTATATCTAATAATTGGTTTAGAAACCAAGACAAAGTCATGCTTCTTGGACATGATGATGGTTATATAAGAGATCAAAACATGAAGGTTACTCTTGTATACAATCACTTTGGACCTAATTGTAATCAACGCATGCCCAGGATTCGTCATGGGTATGCACATGTAGTGAATAATCTTTACTTAGGATGGGTGCAATATGCCATTGGTGGAAGTATGAGACCTAGTCTCAAAAGTGAAGCTAATCTCTTTATAGCACCAACAAAAGGGAGTAAAGAGGTAACATGGAGAAAAAATAGCCACAGAAATGGAGATGCATGGAAGTTTTATTCACTGAAAGACGCATTTGAGAATGGAGCTTCTTTCACAATGACAAAAGGAGGACATGTGCCAAAACCAAACTATAATGAAGAACAACGTTTTAGTGTTGCTAATGTCAAATATGTAAGATTATTAACTCGTTCATCAGGTGTATTACGATGCACTGCAACATGTAAAAGAATCTTAAAATGA 1182 0.3646 MISYNININYWCFALAIVVVTFISNLSVAKQSKIDGLKMNVIDQCWRLNPDWRMNRPQLATCSIGYTGKMTNNTGKDLVHYKVIDPSDDPISPKPGTLRYGASVIQSKVWITFQKDMHIKLERPLLISSFTTIDGRGVNVDIAENACLMIFKATNVIIHNIRLHHCKPQAPGVVMGPEGKVIPLGHVDGDAIRLVTASKIWIDHNTLYNCQDGLLDVTRGSTDVTISNNWFRNQDKVMLLGHDDGYIRDQNMKVTLVYNHFGPNCNQRMPRIRHGYAHVVNNLYLGWVQYAIGGSMRPSLKSEANLFIAPTKGSKEVTWRKNSHRNGDAWKFYSLKDAFENGASFTMTKGGHVPKPNYNEEQRFSVANVKYVRLLTRSSGVLRCTATCKRILK 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01419 393 PRINTS Pollen allergen Amb family signature 290 309 IPR018082 -
Vimu5g01419 393 PRINTS Pollen allergen Amb family signature 188 209 IPR018082 -
Vimu5g01419 393 PRINTS Pollen allergen Amb family signature 268 287 IPR018082 -
Vimu5g01419 393 PRINTS Pollen allergen Amb family signature 330 354 IPR018082 -
Vimu5g01419 393 PRINTS Pollen allergen Amb family signature 87 112 IPR018082 -
Vimu5g01419 393 PRINTS Pollen allergen Amb family signature 124 140 IPR018082 -
Vimu5g01419 393 PRINTS Pollen allergen Amb family signature 361 384 IPR018082 -
Vimu5g01419 393 SUPERFAMILY Pectin lyase-like 39 353 IPR011050 -
Vimu5g01419 393 Gene3D - 39 383 IPR012334 -
Vimu5g01419 393 SMART amb_all 116 313 IPR002022 -
Vimu5g01419 393 PANTHER PECTATE LYASE 18-RELATED 36 386 IPR045032 GO:0030570
Vimu5g01419 393 Pfam Pectate lyase 127 307 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01419 Vimu-Chr5 24944341 24945847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01419 70 317 Polysaccharide Lyase AT5G09280 69.758 1.47e-138 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01419 K01728 - gmx:100780437 682.559