Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01409 ATGTTTGCACAAAGGAATGCTGAAGAAAAATTTAAACTAGGTAACATAAAATTCGCCATCACTTGTGCCACCATGGCCAAAACACTAAACCCAAAACTAGAGGGCATTGATGAAATGATCTTAGCCTACAAGATTCACCTGGCAGCAATGAAAAAAGATCGCAACAATGCAACAAATTGGTACAAAGTTCTAGACATTAAGAAGGGTTTTGAGGACGACATTGAGAGCATTAAGATGCAACGCAACAAAATGGTAGTCATGCTAAACCCAACCAAAAATGCTTCAGTGGCAACTTGGGGTGCTTTTAAACTCATTTACAATGCTTGGACACATCTAAGCGATCCAAATTATCAAAATGTGGAGTTTGAAAGAAAGACATCACAACATCGAATCAAAGTTCCCAAAAGTGTGTGTTTTTGA 420 0.3786 MFAQRNAEEKFKLGNIKFAITCATMAKTLNPKLEGIDEMILAYKIHLAAMKKDRNNATNWYKVLDIKKGFEDDIESIKMQRNKMVVMLNPTKNASVATWGAFKLIYNAWTHLSDPNYQNVEFERKTSQHRIKVPKSVCF 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01409 139 Gene3D DnaJ domain 45 136 IPR036869 -
Vimu5g01409 139 SUPERFAMILY Chaperone J-domain 58 117 IPR036869 -
Vimu5g01409 139 PANTHER BNAC03G44070D PROTEIN 3 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01409 Vimu-Chr5 24857190 24857609 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01409 14 115 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.333 6.59e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01409 - - qsa:O6P43_028986 91.2781