Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01408 ATGTTAGGAGCAGGTAGGGTGGGAGGTGAACTGGGTGGAGAAGGATGCGAAGATCTTAATTCATTTTGTGATCATCATAGTGAGTTAGACATTGACAACATGTCATATGAGGCAAGCATAGGTTTGTCAGAGGAAATTATTGCAAGAGTGGCAAAGACAAATATTTGTTTACTACCTAATAACTTGGAGGGAGTAACTTCAGAGGATCAGGATACTGATCTTTGCGATGAATTTAAAACAAATGAAGAGATAGGAATTTTGCAATGCCAACATAAATTCCACGCAGATTGCATACGAAGATGGTTAGGTGAAAAAGGTGTTTGTCCCATATACAAATCAGAAGTATTAGATCATGAGTAG 360 0.3806 MLGAGRVGGELGGEGCEDLNSFCDHHSELDIDNMSYEASIGLSEEIIARVAKTNICLLPNNLEGVTSEDQDTDLCDEFKTNEEIGILQCQHKFHADCIRRWLGEKGVCPIYKSEVLDHE 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01408 119 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 24 116 IPR045191 GO:0061630
Vimu5g01408 119 Pfam RING-H2 zinc finger domain 84 110 IPR024766 GO:0008270
Vimu5g01408 119 ProSiteProfiles Zinc finger RING-type profile. 74 112 IPR001841 -
Vimu5g01408 119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 119 IPR013083 -
Vimu5g01408 119 SUPERFAMILY RING/U-box 76 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01408 Vimu-Chr5 24846353 24853885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01408 14 116 C3H Transcription Factor Family AT2G15530 35.246 2.49e-15 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01408 - K19041 vum:124843082 137.887