Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01404 ATGGCGTTTCTGGGTCTTTTCTTTTCGATGATTCCTACGCTGCTTCTTGTTGCATCATCATCATCATCAAACTTTCAAGCTGAGGCAAGGCAGTATGATGTTGGTGGAAGAGATGGGTGGGTGGCCAAGCCTTCCGAGGACTACAACCACTGGGCTCAGAGGAACAGATTTCAAGTCAACGATACTCTCCATTTCAAGTACAACAAAGGCATAGATTCAGTTGTGGTGGTGAAGAAGGAGGATTTCGATTCATGCAACATCAACAACCCCATTCAGAAAATGGACGATGGTGATTCAATTTTCCCACTTTCTCATTCGGGTCTCTTTTATTTCGTAAGTGGCAACCTCGACAACTGCAGAATCGGTCAAAAACTCATTGTTCTTGTCATGGCTGTGAGACAACAACCTCATCCTGTGACTGCGCCGCCGCCTACAAGCACCCCGCCGCCGCAGACTGTTCCGGCAACGGGGTTGACCTCTCCGGCGCCGCCCCCTTCGGAGAAATCGGGCTCGGGGAGGGTTGGTGTGGGTTTGGGAGTTTTGGGTTGGCTTAGTTTGTTGGTGTGGCTAATGGGTGAGACTTGTGGTTTGAACTAA 597 0.4958 MAFLGLFFSMIPTLLLVASSSSSNFQAEARQYDVGGRDGWVAKPSEDYNHWAQRNRFQVNDTLHFKYNKGIDSVVVVKKEDFDSCNINNPIQKMDDGDSIFPLSHSGLFYFVSGNLDNCRIGQKLIVLVMAVRQQPHPVTAPPPTSTPPPQTVPATGLTSPAPPPSEKSGSGRVGVGLGVLGWLSLLVWLMGETCGLN 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01404 198 FunFam Early nodulin-like protein 1 29 134 - -
Vimu5g01404 198 Pfam Plastocyanin-like domain 40 123 IPR003245 GO:0009055
Vimu5g01404 198 CDD OsENODL1_like 30 130 IPR041846 -
Vimu5g01404 198 Gene3D - 28 134 IPR008972 -
Vimu5g01404 198 ProSiteProfiles Phytocyanin domain profile. 30 131 IPR003245 GO:0009055
Vimu5g01404 198 MobiDBLite consensus disorder prediction 138 171 - -
Vimu5g01404 198 PANTHER BLUE COPPER PROTEIN 30 140 IPR039391 GO:0009055
Vimu5g01404 198 MobiDBLite consensus disorder prediction 138 161 - -
Vimu5g01404 198 SUPERFAMILY Cupredoxins 29 130 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01404 Vimu-Chr5 24781348 24782308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01404 13 177 Phytocyanin Superfamily AT5G53870 48.810 7.20e-47 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01404 - - vum:124829362 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01404 5 24781348 24782308 Vimu5g01404 5 24781348 24782308 ECH
Vimu4g01078 4 9249051 9249866 Vimu5g01404 5 24781348 24782308 PCT