Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01403 ATGTCACTGCAGGCTCTGAAGGAAACCCTGCAACCTTGTTCGACCCAAAAATCCTCTTCCTCTTCTGCAATTACCCAAACACAGCGCAATCCAATTCTTCGTGACTACGATTCCCTCTTCCCAATCCACAGAAAACCTCCAAAATCATCTCTTTCTGACCAGATTCGCCGCCTTAACGACTCACTATCCCCAGTACACTCCAAAACCCTACAACAAGAAGAAAAAAAAGAGGAACTACTAGAAGAAGAAGAACCTGAGATAGAGAGACCCAAATTCGCTTCAGTTAAATTGCCACAGTTTCAATTTGATCACACTGGACCCTTTGAGCCTCTCCTCCTGTCTTCGCATGGAGAATTTCCGGTGGTTCAGGTCGTTAATTTCTCTTTCTCTCTAGTTAGATTCAGTGAGTTCAGAATTAACCTTTGGATGAGATCTGACTACTCATATCAACGGTCTGATCTTCATTCAGTGGTGTCGATGAAGTATCCACTGACTTACGTTGGAGAACCTGACTCGTCATCTTTGGTTCCTGCATCTATAAACTGTAGACTGCTTGAGCATCAAAGAGAGGGTGTGAGGTTTTTGTATGGTTTGTACAAGAACAATCATGGAGGCATACTTGGAGATGACATGGGTCTTGGGAAGACAATTCAAGCAATAGCATTTCTTGCTGCTGTCTTCGGTAAAGAACATTCTACCCTAAATGAAAACCAGCTTGAGAAAAGAGACCCCGCATTAATAATATGCCCAACATCTGTTATCCACAACTGGGAGAGTGAATTCTCTAAGTGGTCTAACTTCACTGTTTCCATTTATCATGGTGCAAACCGGGATTTGATATTTGATAAATTGGAAGCAAATGGAGTAGAGATACTTATTACCAGTTTTGACACATACAGGATTCATGGAAGTTTGTTGTCAGATGTCAAATGGAATGTCGTGATTGTCGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCTTGTTTACAAATTAAAACCCTTAGACGGTATGGTCTCACTGGGACTATAATGCAAAATAAGATAATGGAACTGTTCAATCTCTTCAACTGGGTTTCACCTGGATCCCTTGGAACACGGGAACACTTTCGTGACTTCTATGATGAACCCCTTAAGCATGGCCAGAGGTCAACTGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTGGAAGTTCTTCATAAATATATGTTGAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGATGGGTAAGGAAGATAACATTGTGTTTTGTGCAATGAGTGATGTGCAAAAACGTATTTACAGGAGAATGTTACAGCTTCCTGACATTCAATGCCTTATAAATAAGAACTTGCCGTGTAGTTGTGGTAGCCCTCTCACTCAAGTTGAATGTTGCAAGAGGATAGTACCAGATGGAGTTATTTGGCCTTACTTGCATAGAGATAACCCAGATGGTTGTGATTCATGCCCCTTTTGCCTTGTCCTTCCGTGCCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTCATCAAACCAAACCCCAAAGATGACCCTGAGAAACAAAGTAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCCCTGACATCGATTTAGTGGGTGGGAAAACACAAAATGAAAGTTTCATGGGTCTAAGTGATGTGAAACATTGTGGCAAAATGCGAGCACTTGAGAAGCTATTGTTCTCATGGTTTTCACAGGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGAGAACTTCCTCTTATTTATTGCCTTTATGCCCTAGTGGTGGCTTTCAGTCTTTGGATGACCAAAGCACTGAATTTTTCTGGCATTGGGATGCTGGACATACTGGAGAAATTTCTTATTCGAAAAGGCTACTGTTTCTCAAGACTTGATGGGTCCACTCCTACTAATTTACGCCAACCCCTGGTTGATGATTTCAACTCAAGTCCAAGCAAACAAGTATTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCAAACCGTGTTGTAATATTTGACCCTAACTGGAACCCTGCTCAAGACTTACAGGCTCAGGACAGGTCCTTTCGATTTGGACAGAAGCGGCATGTCGTGGTGTTCCGTCTTCTTGCAGCTGGTTCACTTGAAGAACTTGTTTACTCACGTCAGGTGTATAAGCAGCAGCTCTCGAACATTGCTGTCTCTGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAAGAATTTCAAGGAGAGCTATTTGGTATTTCCAATTTATTCCGAGATTTGTCAGATAAGCTGTTTACTAGTGAGATCATTGAATTGCATAAAGAACATGGACATGAATCGGAACAACTGGAAGAAGTAAGTCTGTCAGACCAACGAGGTTCATCGGTATCAGAGTCAGAAACCAGATTATGTCATAAGTCTGCTGGGGCTGCAACAAGCAAACCAGATCTTGAAGGCCTTGGCATAGTATATACTCATCGCAATGAAGACATTGTCAACTTTGGACCTGGGATTCAAGGGAAAATAAATGCCATCCCATCAAATGATAGCTTAGTCAAGCCTAGCACCTCTTTGGATCATCAAAGAAAAAAACCAGAAAAAAGGAAAGTTCCTTTGATTGATGATAGGAAGAGGACCCAATATAAGCTCCTTGCTCAGTCTATGGGCATGGAAGAGCTTGCCTTTAGCAAATGGTTATTATCAGCGACTCCACTTGAGAGAGAAAAAGTGCTTCTTGACTACAAGAAGAAAAAGAAGATGCCTAATGGTTGA 2832 0.417 MSLQALKETLQPCSTQKSSSSSAITQTQRNPILRDYDSLFPIHRKPPKSSLSDQIRRLNDSLSPVHSKTLQQEEKKEELLEEEEPEIERPKFASVKLPQFQFDHTGPFEPLLLSSHGEFPVVQVVNFSFSLVRFSEFRINLWMRSDYSYQRSDLHSVVSMKYPLTYVGEPDSSSLVPASINCRLLEHQREGVRFLYGLYKNNHGGILGDDMGLGKTIQAIAFLAAVFGKEHSTLNENQLEKRDPALIICPTSVIHNWESEFSKWSNFTVSIYHGANRDLIFDKLEANGVEILITSFDTYRIHGSLLSDVKWNVVIVDEAHRLKNEKSKLYKACLQIKTLRRYGLTGTIMQNKIMELFNLFNWVSPGSLGTREHFRDFYDEPLKHGQRSTAPDRFVQIANKRKQHLVEVLHKYMLRRTKEETIGHLMMGKEDNIVFCAMSDVQKRIYRRMLQLPDIQCLINKNLPCSCGSPLTQVECCKRIVPDGVIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPEKQSKDAEFAAAVFGPDIDLVGGKTQNESFMGLSDVKHCGKMRALEKLLFSWFSQGDKVLLFSYSVRELPLIYCLYALVVAFSLWMTKALNFSGIGMLDILEKFLIRKGYCFSRLDGSTPTNLRQPLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGISNLFRDLSDKLFTSEIIELHKEHGHESEQLEEVSLSDQRGSSVSESETRLCHKSAGAATSKPDLEGLGIVYTHRNEDIVNFGPGIQGKINAIPSNDSLVKPSTSLDHQRKKPEKRKVPLIDDRKRTQYKLLAQSMGMEELAFSKWLLSATPLEREKVLLDYKKKKKMPNG 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01403 943 MobiDBLite consensus disorder prediction 807 822 - -
Vimu5g01403 943 Gene3D - 428 812 IPR027417 -
Vimu5g01403 943 Gene3D - 160 415 IPR038718 -
Vimu5g01403 943 MobiDBLite consensus disorder prediction 869 888 - -
Vimu5g01403 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 768 IPR027417 -
Vimu5g01403 943 Pfam SNF2-related domain 200 456 IPR000330 GO:0005524|GO:0140658
Vimu5g01403 943 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 165 415 - -
Vimu5g01403 943 MobiDBLite consensus disorder prediction 1 85 - -
Vimu5g01403 943 MobiDBLite consensus disorder prediction 796 830 - -
Vimu5g01403 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 416 IPR027417 -
Vimu5g01403 943 PANTHER SNF2/RAD54 FAMILY MEMBER 27 603 - -
Vimu5g01403 943 CDD SF2_C_SNF 566 724 - -
Vimu5g01403 943 SMART helicmild6 630 713 IPR001650 -
Vimu5g01403 943 SMART ultradead3 180 374 IPR014001 -
Vimu5g01403 943 MobiDBLite consensus disorder prediction 1 33 - -
Vimu5g01403 943 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 366 IPR014001 -
Vimu5g01403 943 Pfam Helicase conserved C-terminal domain 583 713 IPR001650 -
Vimu5g01403 943 MobiDBLite consensus disorder prediction 52 68 - -
Vimu5g01403 943 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 601 757 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01403 Vimu-Chr5 24761300 24767462 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01403 670 756 RAD5 or RAD16-like Gene Family AT3G16600 39.080 2.95e-11 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu5g01403 SNF2_N 2.5e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01403 K20098 - gmx:100781003 1348.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01403 5 24761300 24767462 Vimu5g01403 5 24761300 24767462 ECH