Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01400 ATGGCTTCAACTTCAGCATCTTGTTCCTTTACCATTAGTGTGTTATTCCTCATTTTCGTGCACCTGTCATGTTTCGCAAACAGCCTTAATGCAAAGCACAGTCACAACCATCGCAAGCCTCAACACACTGAGAATCCTCCCTTGAATCCAAGACTTCACATGGCCTTTCTTGGCCTCCAAGCATGGAAGCAAGTGATCTACTCAGACCCAAATAACTTCACTGCCAATTGGGTAGGTCCTTCAGTTTGCAACTACACAGGTGTGTACTGTGCTCCCTCAGTTGATGATCCTGAAGTGAGAGTTGTGGCTGGCATTGACCTTAACTTTGGAGACATAGCAGGGTTCCTACCCGAAGAAATAGGCCTTCTGTCAGACCTTGCACTCCTTCACCTTAGTAATAATCGCTTCTGTGGCATTCTGCCAATGTCCTTAACCAACCTCACTCTACTCTATGAGTTTGATATTAGCAGCAACAGGCTTGTTGGTCCCTTTCCTTTGGTTTTGCTTTCCCTTCCTATGCTCACCTACCTTGACCTCCGCTACAATGAATTTGAAGGGCCATTGCCTCCTCAACTATTCAACAAAACCTTTGATGCCATTTTCCTCAACAACAACCGCTTCAGCAGTTCTATACCTCCAAACTTGGGCAAAAACTCAGCTACTGTCTTGGTCTTTGCCAACAACAAATTTGGAGGGTGTCTTCCAGAAAGCATAGTGAACTTTGCTGACACTTTGGAGGAGCTTGTGCTAATCAACACTAGCTTGTCAGGTTGTTTGCCACAGCAAGTGGGGTTTCTCTACAAACTGAGAGTGTTGGATGTGAGTTTCAACAGCATTGTTGGCCCCATTCCTTATAGCCTTGCAGGGTTGTCTCACTTGGAGCAATTAAACCTGGGACACAACATGATGAGTGGCACTGTCCCTATGGGGGTTTGTGAGTTGCCAAACTTGGAAAACTTCACTTTCTCTTACAACTTCTTCTGTGAGGAAGAGGGCATCTGTCAGAACTTGACATCAAAGAGAATAGTGTTTGATGACAGAAGGAACTGTTTGCCAGAGAAGCCACTGCAGAGGAGCCAAAAGGAATGCAGTGCCAAACTTGAACACCCAGTTGATTGCTCTGAGCTTTGCTGTGTTGTTGGGAGCAATGTCTCTGCTGGTTCAGTGGCTGTTCCACCTGCTGCTATTCCCTCAGCAATGCCTCTATCTGCTCCTCTTCTTGCACCAAGCCACCCTTAA 1239 0.4609 MASTSASCSFTISVLFLIFVHLSCFANSLNAKHSHNHRKPQHTENPPLNPRLHMAFLGLQAWKQVIYSDPNNFTANWVGPSVCNYTGVYCAPSVDDPEVRVVAGIDLNFGDIAGFLPEEIGLLSDLALLHLSNNRFCGILPMSLTNLTLLYEFDISSNRLVGPFPLVLLSLPMLTYLDLRYNEFEGPLPPQLFNKTFDAIFLNNNRFSSSIPPNLGKNSATVLVFANNKFGGCLPESIVNFADTLEELVLINTSLSGCLPQQVGFLYKLRVLDVSFNSIVGPIPYSLAGLSHLEQLNLGHNMMSGTVPMGVCELPNLENFTFSYNFFCEEEGICQNLTSKRIVFDDRRNCLPEKPLQRSQKECSAKLEHPVDCSELCCVVGSNVSAGSVAVPPAAIPSAMPLSAPLLAPSHP 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01400 412 Gene3D Ribonuclease Inhibitor 57 217 IPR032675 -
Vimu5g01400 412 Pfam Leucine rich repeat 244 302 IPR001611 GO:0005515
Vimu5g01400 412 Gene3D Ribonuclease Inhibitor 218 375 IPR032675 -
Vimu5g01400 412 SUPERFAMILY L domain-like 63 342 - -
Vimu5g01400 412 FunFam Leucine-rich repeat extensin-like protein 1 56 217 - -
Vimu5g01400 412 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 18 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01400 Vimu-Chr5 24708131 24710408 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01400 49 378 Leucine-rich Repeat extension Gene Families AT3G24480 54.079 9.94e-133 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01400 - - gmx:100782629 692.189