Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01398 ATGGCTGATGGACTGGAACATCCATCAGTTGTTCAGAAGCTAGCTGGACAGTCTTTCCTTGTCTCCAGGCTTAGCCCCAACATTCACTCTAGGAATTATTCCGCAACTGGTTCTTACCTCAATGGAGGACTGCACACTTCTGGGTTGGCTGCCCTGTCATCTGTATCTCCAATTACTGCACATGCTCCAGCAGAGAAAGGACCAGGTGCTTTTATGGTGGATTTTCTGATGGGTGGAGTATCTGCTGCTGTATCAAAGACAGCTGCTGCTCCAATTGAGAGAGTTAAATTGCTCATTCAAAATCAGGACGAAATGATCAAAAGTGGTCGGTTATCTGAACCATACAAGGGAATTGGTGATTGTTTTGCTCGAACCATGAAGGATGAGGGTGTAATTGCTCTTTGGAGAGGCAATACTGCCAATGTTATCAGATACTTCCCCACTCAGGCTCTGAACTTTGCTTTTAAGGATTACTTCAAGAGGCTATTTAACTTTAAAAAGGACAAAGATGGCTACTGGAAATGGTTTGCTGGAAATTTGGCATCTGGTGGGGCTGCTGGGGCTTCTTCTCTCTTATTTGTCTATTCTTTGGATTATGCCAGAACTCGTTTGGCTAACGATTCAAAGGCTGCAAAGAAGGGTGGTGAGAGGCAGTTTAATGGTCTGATTGATGTATACAGGAAAACCATTAAGTCTGATGGTATTGCTGGCCTTTACCGTGGTTTCAACATTTCATGTGTTGGAATTATAGTGTACCGTGGTCTTTACTTTGGAATGTATGATTCTCTGAAACCAGTTGTTTTGGTTGGTGGGTTGCAGAGAGAGGTTTCTAGCCAAGGTTATACCAGCAACAATCCTTCCTATGTACCAAATGACATGCGTGAAAGCAGCAAAGCAGATATCCTTAATCTGAGTGCTACAGATAGTTTCTTTGCTAGTTTCCTTTTGGGATGGGGAATCACAATTGGTGCTGGTTTGGCTTCCTATCCCATTGACACTGTGCGTAGAAGGATGATGATGACTTCTGGAGAAGCTGTGAAGTATAAGAGCTCTTTGCATGCATTTCAAACAATCGTAGCAAAAGAAGGTACCAAGTCACTCTTCAAAGGCGCTGGTGCAAACATATTGCGAGCTGTTGCAGGTGCTGGTGTGCTTGCTGGTTATGATAAGTTGCAGCTTATTATGTTCGGAAAGAAATACGGGTCTGGCGGGGGCTAA 1218 0.4384 MADGLEHPSVVQKLAGQSFLVSRLSPNIHSRNYSATGSYLNGGLHTSGLAALSSVSPITAHAPAEKGPGAFMVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFARTMKDEGVIALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDKDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDSKAAKKGGERQFNGLIDVYRKTIKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLVGGLQREVSSQGYTSNNPSYVPNDMRESSKADILNLSATDSFFASFLLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQTIVAKEGTKSLFKGAGANILRAVAGAGVLAGYDKLQLIMFGKKYGSGGG 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01398 405 Gene3D Mitochondrial carrier domain 72 401 IPR023395 -
Vimu5g01398 405 ProSiteProfiles Solute carrier (Solcar) repeat profile. 308 394 IPR018108 -
Vimu5g01398 405 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 68 404 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu5g01398 405 SUPERFAMILY Mitochondrial carrier 71 390 IPR023395 -
Vimu5g01398 405 Pfam Mitochondrial carrier protein 308 395 IPR018108 -
Vimu5g01398 405 Pfam Mitochondrial carrier protein 173 266 IPR018108 -
Vimu5g01398 405 Pfam Mitochondrial carrier protein 71 166 IPR018108 -
Vimu5g01398 405 ProSiteProfiles Solute carrier (Solcar) repeat profile. 69 162 IPR018108 -
Vimu5g01398 405 PRINTS Mitochondrial carrier protein signature 74 87 IPR002067 GO:0055085
Vimu5g01398 405 PRINTS Mitochondrial carrier protein signature 189 207 IPR002067 GO:0055085
Vimu5g01398 405 PRINTS Mitochondrial carrier protein signature 137 157 IPR002067 GO:0055085
Vimu5g01398 405 PRINTS Mitochondrial carrier protein signature 317 339 IPR002067 GO:0055085
Vimu5g01398 405 PRINTS Mitochondrial carrier protein signature 87 101 IPR002067 GO:0055085
Vimu5g01398 405 PRINTS Adenine nucleotide translocator signature 174 187 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu5g01398 405 PRINTS Adenine nucleotide translocator signature 148 160 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu5g01398 405 PRINTS Adenine nucleotide translocator signature 71 83 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu5g01398 405 PRINTS Adenine nucleotide translocator signature 115 136 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu5g01398 405 PRINTS Adenine nucleotide translocator signature 313 329 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu5g01398 405 ProSiteProfiles Solute carrier (Solcar) repeat profile. 174 266 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01398 Vimu-Chr5 24677702 24680567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01398 3 396 Antiporters AT4G28390 74.442 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01398 K05863 - gmx:100818408 661.759