Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01397 ATGATCACCACCGCGCTCAGCCATTCACCTGGTTTTACAATTGCGGTTAATTCACCCGAGGATCCTCTCGTCCCCTTTCTTTGGTTCATCCCTTTCTCTCTGGAACTCTTTGCAGACACAAAGTCTATCAAGAAAGCCCTAGAAGCTTCGGGTGGTTCCACTCCAAATCTCAGTAACTTACTCGGAGATTGCATCAGAAACTTCAAGAACAATGACCGGTATCGAAACGACGTCAGATTCCTCAAGATCTGGCTCATCTATATGGGAGTTAGTGATGATTTTGCCAGTGTTTTCAAAGAAATGCTGGACAGTAATGTATGTGCCAATAATTCTTCACTTTATGTTTGGTCTGCAAGTTTATTTGAGTTGAAGGGAAGATTGCGTGATGCTCTCTCCATCTATCAGCTTGGGATTGGCAGGAATGCGAAGCCAGTTGAGTGGTTGAGGAAGGCGCATTCCTTGTTTCTCAATAGAATGTCTGAAATACAGAATGCTGCTTCAAACCTGAAGGTTGATGATATAGAATCCATGAAATTGGAAAATTGTGGCATTAATCCTTGGGACACTTCCACCATGGATAGCCTGTTAAAGACGATACATCCTTTACTTATGAAATTTGATGGGTACCGTTCAAGCGCTAAACCATACTCAGGAAAAGTGGCCTTATCTGCGTTGAAGAATTCATCAAGGAATAAAGTTATTGAGATAGGTGGAATGAAGTACCTTATAAAGGGATGTGCTGGACAGGGTGGTTTTGCCCAAGTATATAAGGCTAATGTCAACAGTGATCCTGACAACGTTGTTGCTCTAAAGATACAAAAACCAGCTTTTCCGTGGGAATTTTACATTTATCGTCAGCTTGATCGGCGCATCTTAGACAGAGAGAGGTCAAGTTATGGTTTCGCTCACGGAATTCATCTCTATTCTGACTGTAGTATACTCATCTGTGACTATTTAGCTAATGGGACACTACAGGATGTGGTGAACTCATATCTGGTCTTAGGAAAATCCATGGAAGAAGTGTTATGCATTTATTACACTATTGAAATGTTACACATGGTTGAAACTTTGCATGGTGTTGGCTTGATTCATGGTGATTTCAAGCCTGATAATCTGCTAATTCGATATTCTAGGAGTGACCTTACTGAAGATGAGTTCTTGAACCGAAGTGGTCCTTGGTGTGATGAGGGTGTCTGCCTTGTTGACTGGGGAAGAGGGATTGATCTGCAACTCTTTCCAGATCACACGGTATTTACGGGTGATTGCAGAACTTCTGGTTTTCGCTGCATTGAGATGCTAGAGAAGAAGCCGTGGAAATTTCAGGCAAGTCACGTAGATGCATATGGCCTTTGCGGTATTGTTCATGTGATGTTGCATGGTTCCTATATGGAAGTCGTCAAGAAAGAACAGTCCGATGGCGGCTACGTGTATCTTCCCAGACTACCCTTTAAACGTTACTGGAACATTGAGCTCTGGAAGAGTTTCTTCACTAAAATGCTAAACCAATACCCCCATGATGATGATATTAGTTTGCTTCATGACTTGAAGAAGTCCTTCCAAGACTATATGGGCTCCAATCCCCAGCTTATAAAGAAACTAAAGGGGTTACTCTCAAGGCAAAGGGCTTCCATGTGTTCTGCTTAA 1644 0.4227 MITTALSHSPGFTIAVNSPEDPLVPFLWFIPFSLELFADTKSIKKALEASGGSTPNLSNLLGDCIRNFKNNDRYRNDVRFLKIWLIYMGVSDDFASVFKEMLDSNVCANNSSLYVWSASLFELKGRLRDALSIYQLGIGRNAKPVEWLRKAHSLFLNRMSEIQNAASNLKVDDIESMKLENCGINPWDTSTMDSLLKTIHPLLMKFDGYRSSAKPYSGKVALSALKNSSRNKVIEIGGMKYLIKGCAGQGGFAQVYKANVNSDPDNVVALKIQKPAFPWEFYIYRQLDRRILDRERSSYGFAHGIHLYSDCSILICDYLANGTLQDVVNSYLVLGKSMEEVLCIYYTIEMLHMVETLHGVGLIHGDFKPDNLLIRYSRSDLTEDEFLNRSGPWCDEGVCLVDWGRGIDLQLFPDHTVFTGDCRTSGFRCIEMLEKKPWKFQASHVDAYGLCGIVHVMLHGSYMEVVKKEQSDGGYVYLPRLPFKRYWNIELWKSFFTKMLNQYPHDDDISLLHDLKKSFQDYMGSNPQLIKKLKGLLSRQRASMCSA 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01397 547 Gene3D Transferase(Phosphotransferase) domain 1 239 544 - -
Vimu5g01397 547 SMART serkin_6 241 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01397 547 SUPERFAMILY Protein kinase-like (PK-like) 240 505 IPR011009 -
Vimu5g01397 547 Pfam Mad3/BUB1 homology region 1 20 138 IPR013212 -
Vimu5g01397 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 362 374 IPR008271 GO:0004672|GO:0006468
Vimu5g01397 547 Gene3D - 13 174 - -
Vimu5g01397 547 ProSiteProfiles BUB1 N-terminal domain profile. 10 181 IPR013212 -
Vimu5g01397 547 SMART mad3_bub1_i 5 138 IPR013212 -
Vimu5g01397 547 FunFam Mitotic checkpoint serine/threonine-protein kinase BUB1 239 544 - -
Vimu5g01397 547 Pfam Protein kinase domain 248 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01397 547 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 177 541 IPR015661 GO:0007094
Vimu5g01397 547 ProSiteProfiles Protein kinase domain profile. 241 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01397 Vimu-Chr5 24653967 24659203 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01397 235 374 MAP Kinase Kinase Kinase Kinase AT3G15220 29.787 1.64e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK BUB Vimu5g01397 Pkinase 3.1e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01397 K02178 - gmx:100783171 919.842