Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01384 ATGAAGGGAAAATCTGGACATCCCATGGAAGATTATTTAGTTTCAGAATTCAAGCAAGAAAAGGACAGAGAATTAGGCTTGTTTGCAATATTTGATGGCCACTTAGGCCATGATGTTGCAAGCTATCTGCAGAACCATCTTTTTCATAACATCTTGAAACAGCATGACTTTTGGAATGAGACAGAACACGCAGTGAAGAGGGCTTATATTGAAACTGATGAGAAAATATTGGAACAAGCACTTGAGTTGGGACGAGGAGGGTCAACAGCTGTAACTGCAATACTGATAGATGGTCAGAAGCTTGTAGTAGGAAATGTTGGTGACTCAAGAGCTGTTATTTGTGAGCATGGAAAGGCTAGGCAACTATCTGTAGATCATGAACCAAGTAAGGAAAAGAAATCCATTGAGAGACGTGGGGGCTTTGTATCAAACATTCCAGGAGATGTCCCTCGAGTAGATGGACAGTTAGCAGTAGCAAGAGCTTTTGGTGATAGGAGCTTGAAGATGCATCTTAGTTCAGAACCTGATGTGTTTATAGAGGAAGTACTTCATCATACAGAGTTTCTTATTCTGGCCAGTGATGGAATATGGAAGGTAATGTCAAACCAAGAAGCAGTAGATTCCATTAGGCACATAAAGGATGCTCAAGCTGCTGCAAAGCACTTGATAGAAGAAGCAGTTTCCAAGAAAAGTAAAGATGACATTTCTTGCATAGTTGTGAGGTTCCAATGA 732 0.4057 MKGKSGHPMEDYLVSEFKQEKDRELGLFAIFDGHLGHDVASYLQNHLFHNILKQHDFWNETEHAVKRAYIETDEKILEQALELGRGGSTAVTAILIDGQKLVVGNVGDSRAVICEHGKARQLSVDHEPSKEKKSIERRGGFVSNIPGDVPRVDGQLAVARAFGDRSLKMHLSSEPDVFIEEVLHHTEFLILASDGIWKVMSNQEAVDSIRHIKDAQAAAKHLIEEAVSKKSKDDISCIVVRFQ 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01384 243 PANTHER PROTEIN PHOSPHATASE 2 242 IPR015655 GO:0004722|GO:0006470
Vimu5g01384 243 ProSiteProfiles PPM-type phosphatase domain profile. 1 242 IPR001932 -
Vimu5g01384 243 Gene3D - 1 243 IPR036457 -
Vimu5g01384 243 Pfam Protein phosphatase 2C 7 235 IPR001932 -
Vimu5g01384 243 SMART PP2C_4 3 240 IPR001932 -
Vimu5g01384 243 FunFam Probable protein phosphatase 2C 39 1 243 - -
Vimu5g01384 243 SUPERFAMILY PP2C-like 2 242 IPR036457 -
Vimu5g01384 243 CDD PP2Cc 7 242 IPR001932 -
Vimu5g01384 243 SMART PP2C_SIG_2 9 242 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01384 Vimu-Chr5 24549232 24550752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01384 1 242 PP2C-type Phosphatase Gene Family AT4G28400 74.793 4.13e-134 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01384 K17506 - gmx:100819846 441.425